RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 PHF1O43189 567 aaPredicted RBP8.79□□□□□ -1
SS18-210ENST00000578700 CD5LO43866 347 aa8.79□□□□□ -1
SS18-210ENST00000578700 UBL3O95164 117 aa8.79□□□□□ -1
SS18-210ENST00000578700 PAX1P15863 534 aa8.79□□□□□ -1
SS18-210ENST00000578700 RAB3AP20336 220 aa8.79□□□□□ -1
SS18-210ENST00000578700 MPGP29372 298 aa8.79□□□□□ -1
SS18-210ENST00000578700 SCN1BQ07699 218 aa8.79□□□□□ -1
SS18-210ENST00000578700 HES5Q5TA89 166 aa8.79□□□□□ -1
SS18-210ENST00000578700 TRIQKQ629K1 86 aa8.79□□□□□ -1
SS18-210ENST00000578700 ZNF774Q6NX45 483 aa8.79□□□□□ -1
SS18-210ENST00000578700 ANKRD16Q6P6B7 361 aa8.79□□□□□ -1
SS18-210ENST00000578700 ZNF627Q7L945 461 aa8.79□□□□□ -1
SS18-210ENST00000578700 NUFIP2Q7Z417 695 aaKnown RBP8.79□□□□□ -1
SS18-210ENST00000578700 LRRTM1Q86UE6 522 aa8.79□□□□□ -1
SS18-210ENST00000578700 SKA3Q8IX90 412 aa8.79□□□□□ -1
SS18-210ENST00000578700 CCDC36Q8IYA8 594 aa8.79□□□□□ -1
SS18-210ENST00000578700 C19orf18Q8NEA5 215 aa8.79□□□□□ -1
SS18-210ENST00000578700 OR8B12Q8NGG6 310 aa8.79□□□□□ -1
SS18-210ENST00000578700 PPP1R14AQ96A00 147 aa8.79□□□□□ -1
SS18-210ENST00000578700 FGGYQ96C11 551 aa8.79□□□□□ -1
SS18-210ENST00000578700 S100A16Q96FQ6 103 aaKnown RBP8.79□□□□□ -1
SS18-210ENST00000578700 MIXL1Q9H2W2 232 aa8.79□□□□□ -1
SS18-210ENST00000578700 RGCCQ9H4X1 137 aa8.79□□□□□ -1
SS18-210ENST00000578700 GPR84Q9NQS5 396 aa8.79□□□□□ -1
SS18-210ENST00000578700 MALT1Q9UDY8 824 aa8.79□□□□□ -1
SS18-210ENST00000578700 STEAP1Q9UHE8 339 aa8.79□□□□□ -1
SS18-210ENST00000578700 SPATA2Q9UM82 520 aa8.79□□□□□ -1
SS18-210ENST00000578700 V9GYH0 126 aa8.79□□□□□ -1
SS18-210ENST00000578700 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.79□□□□□ -11e-8■■■■□ 23.5
SS18-210ENST00000578700 TRAV8-7A0A075B6U6 113 aa8.78□□□□□ -1
SS18-210ENST00000578700 A8MV72 311 aaPredicted RBP8.78□□□□□ -1
SS18-210ENST00000578700 LCATP04180 440 aa8.78□□□□□ -1
SS18-210ENST00000578700 SLC2A1P11166 492 aa8.78□□□□□ -1
SS18-210ENST00000578700 CD79AP11912 226 aa8.78□□□□□ -1
SS18-210ENST00000578700 SNRPBP14678 240 aaKnown RBP8.78□□□□□ -1
SS18-210ENST00000578700 ATF1P18846 271 aa8.78□□□□□ -1
SS18-210ENST00000578700 ELK1P19419 428 aa8.78□□□□□ -1
SS18-210ENST00000578700 AZGP1P25311 298 aaKnown RBP8.78□□□□□ -1
SS18-210ENST00000578700 OTX1P32242 354 aaPredicted RBP8.78□□□□□ -1
SS18-210ENST00000578700 NR4A2P43354 598 aa8.78□□□□□ -1
SS18-210ENST00000578700 MAGEB1P43366 347 aa8.78□□□□□ -1
SS18-210ENST00000578700 PITPNBP48739 271 aa8.78□□□□□ -1
SS18-210ENST00000578700 PSG4Q00888 419 aa8.78□□□□□ -1
SS18-210ENST00000578700 C9orf135Q5VTT2 229 aa8.78□□□□□ -1
SS18-210ENST00000578700 PYHIN1Q6K0P9 492 aa8.78□□□□□ -1
SS18-210ENST00000578700 LINGO2Q7L985 606 aa8.78□□□□□ -1
SS18-210ENST00000578700 NR2C2APQ86WQ0 139 aa8.78□□□□□ -1
SS18-210ENST00000578700 JAGN1Q8N5M9 183 aa8.78□□□□□ -1
SS18-210ENST00000578700 OR1M1Q8NGA1 313 aa8.78□□□□□ -1
SS18-210ENST00000578700 OR6M1Q8NGM8 313 aa8.78□□□□□ -1
SS18-210ENST00000578700 OR6K3Q8NGY3 331 aa8.78□□□□□ -1
SS18-210ENST00000578700 SETD6Q8TBK2 473 aa8.78□□□□□ -1
SS18-210ENST00000578700 LGALS14Q8TCE9 139 aa8.78□□□□□ -1
SS18-210ENST00000578700 IGFBPL1Q8WX77 278 aa8.78□□□□□ -1
SS18-210ENST00000578700 RAB40AQ8WXH6 277 aa8.78□□□□□ -1
SS18-210ENST00000578700 C10orf35Q96D05 121 aa8.78□□□□□ -1
SS18-210ENST00000578700 ORAI1Q96D31 301 aa8.78□□□□□ -1
SS18-210ENST00000578700 CPNE2Q96FN4 548 aaPredicted RBP8.78□□□□□ -1
SS18-210ENST00000578700 FAM71F1Q96KD3 344 aaPredicted RBP8.78□□□□□ -1
SS18-210ENST00000578700 SORCS2Q96PQ0 1159 aa8.78□□□□□ -1
SS18-210ENST00000578700 ACTR6Q9GZN1 396 aa8.78□□□□□ -1
SS18-210ENST00000578700 LIN7BQ9HAP6 207 aa8.78□□□□□ -1
SS18-210ENST00000578700 TMEM138Q9NPI0 162 aa8.78□□□□□ -1
SS18-210ENST00000578700 CYSLTR2Q9NS75 346 aa8.78□□□□□ -1
SS18-210ENST00000578700 TAS2R4Q9NYW5 299 aa8.78□□□□□ -1
SS18-210ENST00000578700 YLPM1P49750 1951 aaKnown RBP8.77□□□□□ -1
SS18-210ENST00000578700 A0A096LPE4 126 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 A0A1W2PPZ6 126 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 SLC17A2O00624 439 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 XRCC2O43543 280 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 SYNGR3O43761 229 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 NDUFS7O75251 213 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 SOD3P08294 240 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 COX5BP10606 129 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 PPP3CBP16298 524 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 CCL1P22362 96 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 HTR2CP28335 458 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 BDKRB2P30411 391 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 THBS2P35442 1172 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 UBE2NP61088 152 aaKnown RBP8.77□□□□□ -1.01
SS18-210ENST00000578700 MALLQ13021 153 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 TSC22D1Q15714 1073 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 PABPC1L2AQ5JQF8 200 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 Q8N402 240 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 POC5Q8NA72 575 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 AKR7LQ8NHP1 331 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 CHPT1Q8WUD6 406 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 PP6455Q8WZ26 134 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 NEUROG1Q92886 237 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 SRRQ9GZT4 340 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 WNT5BQ9H1J7 359 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 SLC17A5Q9NRA2 495 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 PLSCR4Q9NRQ2 329 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 PRSS50Q9UI38 385 aa8.77□□□□□ -1.01
SS18-210ENST00000578700 A0A1B0GTI1 187 aa8.76□□□□□ -1.01
SS18-210ENST00000578700 LOC390937A0A1W2PQ73 354 aa8.76□□□□□ -1.01
SS18-210ENST00000578700 CIB4A0PJX0 185 aa8.76□□□□□ -1.01
SS18-210ENST00000578700 DHRS7CA6NNS2 312 aa8.76□□□□□ -1.01
SS18-210ENST00000578700 SULT1B1O43704 296 aa8.76□□□□□ -1.01
SS18-210ENST00000578700 DHRS3O75911 302 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms