RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 LINC00527Q9UJ94 153 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 LHFPL6Q9Y693 200 aa12.57□□□□□ -0.4
VPS53-218ENST00000575207 IGKV1D-17A0A075B6S4 117 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 SERPINE3A8MV23 424 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 H3BSH0 61 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 RIPK2O43353 540 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 OR8U8P0C7N1 319 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 ZNF823P16415 610 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 RBM34P42696 430 aaKnown RBP12.56□□□□□ -0.4
VPS53-218ENST00000575207 ZNF273Q14593 569 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 ASPHD1Q5U4P2 390 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 ACSM6Q6P461 480 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 CORO6Q6QEF8 472 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 DPP10Q8N608 796 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 NDNFQ8TB73 568 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 TMEM255BQ8WV15 326 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 ZNF222Q9UK12 451 aa12.56□□□□□ -0.4
VPS53-218ENST00000575207 COA3Q9Y2R0 106 aaPredicted RBP12.56□□□□□ -0.4
VPS53-218ENST00000575207 CXorf65A6NEN9 183 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 ANKRD30BLA7E2S9 258 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 AHCYL1O43865 530 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 PTP4A3O75365 173 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 TRAP1Q12931 704 aaKnown RBP12.55□□□□□ -0.4
VPS53-218ENST00000575207 SCARB2Q14108 478 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 DUSP7Q16829 419 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 SNAI3Q3KNW1 292 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 CXorf66Q5JRM2 361 aaPredicted RBP12.55□□□□□ -0.4
VPS53-218ENST00000575207 LCN8Q6JVE9 175 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 OGFOD2Q6N063 350 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 CEMP1Q6PRD7 247 aaPredicted RBP12.55□□□□□ -0.4
VPS53-218ENST00000575207 ACP7Q6ZNF0 438 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 TSEN54Q7Z6J9 526 aaKnown RBP12.55□□□□□ -0.4
VPS53-218ENST00000575207 STPG2Q8N412 459 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 LRRC75AQ8NAA5 344 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 OR4D11Q8NGI4 311 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 SDSLQ96GA7 329 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 WDR55Q9H6Y2 383 aaPredicted RBP12.55□□□□□ -0.4
VPS53-218ENST00000575207 TBC1D23Q9NUY8 699 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 HHLA2Q9UM44 414 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 A4GNTQ9UNA3 340 aa12.55□□□□□ -0.4
VPS53-218ENST00000575207 PRSS37A4D1T9 235 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 XKRYO14609 159 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 IMPA2O14732 288 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 AKR7A2O43488 359 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 PSPNO60542 156 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 SLC16A7O60669 478 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 BRI3O95415 125 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 RBP4P02753 201 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 CD247P20963 164 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 TPTEP56180 551 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 SNAPC1Q16533 368 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 KCNMB1Q16558 191 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 PNLIPRP3Q17RR3 467 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 TMPRSS11FQ6ZWK6 438 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 TRMT10CQ7L0Y3 403 aaKnown RBP12.54□□□□□ -0.4
VPS53-218ENST00000575207 NKAIN4Q8IVV8 208 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 CYB561A3Q8NBI2 242 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 OR4M1Q8NGD0 313 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 TMEM239Q8WW34 195 aa12.54□□□□□ -0.4
VPS53-218ENST00000575207 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.54□□□□□ -0.4
VPS53-218ENST00000575207 APOBP04114 4563 aaKnown RBP12.53□□□□□ -0.4
VPS53-218ENST00000575207 OVOL1O14753 267 aa12.53□□□□□ -0.4
VPS53-218ENST00000575207 KHDRBS3O75525 346 aaKnown RBP12.53□□□□□ -0.4
VPS53-218ENST00000575207 PSG2P11465 335 aa12.53□□□□□ -0.4
VPS53-218ENST00000575207 GNALP38405 381 aa12.53□□□□□ -0.4
VPS53-218ENST00000575207 MDH1P40925 334 aaKnown RBP12.53□□□□□ -0.4
VPS53-218ENST00000575207 GLYATL3Q5SZD4 288 aa12.53□□□□□ -0.4
VPS53-218ENST00000575207 MSANTD1Q6ZTZ1 278 aa12.53□□□□□ -0.4
VPS53-218ENST00000575207 ZNF781Q8N8C0 355 aa12.53□□□□□ -0.4
VPS53-218ENST00000575207 GPR32P1Q8NGA4 272 aa12.53□□□□□ -0.4
VPS53-218ENST00000575207 GRHPRQ9UBQ7 328 aa12.53□□□□□ -0.4
VPS53-218ENST00000575207 MOB4Q9Y3A3 225 aa12.53□□□□□ -0.4
VPS53-218ENST00000575207 HSPE1-MOB4S4R3N1 261 aa12.53□□□□□ -0.4
VPS53-218ENST00000575207 C12orf77C9JDV5 145 aa12.52□□□□□ -0.41
VPS53-218ENST00000575207 M0R135 149 aa12.52□□□□□ -0.41
VPS53-218ENST00000575207 OR5F1O95221 314 aa12.52□□□□□ -0.41
VPS53-218ENST00000575207 ELANEP08246 267 aa12.52□□□□□ -0.41
VPS53-218ENST00000575207 FOXE3Q13461 319 aa12.52□□□□□ -0.41
VPS53-218ENST00000575207 PMS2P11Q13670 270 aa12.52□□□□□ -0.41
VPS53-218ENST00000575207 MEP1BQ16820 701 aa12.52□□□□□ -0.41
VPS53-218ENST00000575207 MESTQ5EB52 335 aa12.52□□□□□ -0.41
VPS53-218ENST00000575207 OR2T27Q8NH04 317 aa12.52□□□□□ -0.41
VPS53-218ENST00000575207 DCUN1D4Q92564 292 aa12.52□□□□□ -0.41
VPS53-218ENST00000575207 ZNF799Q96GE5 643 aa12.52□□□□□ -0.41
VPS53-218ENST00000575207 PAIP1Q9H074 479 aaKnown RBP12.52□□□□□ -0.41
VPS53-218ENST00000575207 MED31Q9Y3C7 131 aa12.52□□□□□ -0.41
VPS53-218ENST00000575207 MAGEA13PA6NCF6 341 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 HSPA12AO43301 675 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 IGHG2P01859 326 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 ARSBP15848 533 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 ANOS1P23352 680 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 HTR1DP28221 377 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 DDOSTP39656 456 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 KIR3DL2P43630 455 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 RFX4Q33E94 735 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 PGM2L1Q6PCE3 622 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 OR51A7Q8NH64 312 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 SYT4Q9H2B2 425 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 TMEM38AQ9H6F2 299 aa12.51□□□□□ -0.41
VPS53-218ENST00000575207 OPA3Q9H6K4 179 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms