RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	SBSPON	Q8IVN8	264 aa		9.38	□□□□□ -0.91
CLK3-222	ENST00000568232	ANKRD42	Q8N9B4	389 aa		9.38	□□□□□ -0.91
CLK3-222	ENST00000568232	OR10A6	Q8NH74	314 aa		9.38	□□□□□ -0.91
CLK3-222	ENST00000568232	DNTTIP1	Q9H147	329 aa		9.38	□□□□□ -0.91
CLK3-222	ENST00000568232	SRA1	Q9HD15	236 aa	Known RBP	9.38	□□□□□ -0.91
CLK3-222	ENST00000568232	SSU72	Q9NP77	194 aa	Known RBP	9.38	□□□□□ -0.91
CLK3-222	ENST00000568232	ZMAT5	Q9UDW3	170 aa	Known RBP	9.38	□□□□□ -0.91
CLK3-222	ENST00000568232	IGLV1-36	A0A0B4J1U3	117 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	HTR3E	A5X5Y0	456 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	SH2D7	A6NKC9	451 aa	Predicted RBP	9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	ANKRD30BL	A7E2S9	258 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	RGS16	O15492	202 aa	Predicted RBP	9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	LPL	P06858	475 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	SLC2A1	P11166	492 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	CCL3L1	P16619	93 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	CHAT	P28329	748 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	CEBPD	P49716	269 aa	Predicted RBP	9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	GZMM	P51124	257 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	LUM	P51884	338 aa	Predicted RBP	9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	VMAC	Q2NL98	169 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	AGBL2	Q5U5Z8	902 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	KCTD18	Q6PI47	426 aa	Predicted RBP	9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	EPGN	Q6UW88	154 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	DHDDS	Q86SQ9	333 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	FAM156A	Q8NDB6	213 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	TMEM185A	Q8NFB2	350 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	SLC26A10	Q8NG04	563 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	OR52H1	Q8NGJ2	320 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	OR2AJ1	Q8NGZ0	328 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	RPL3L	Q92901	407 aa	Known RBP	9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	ATP6V1G3	Q96LB4	118 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	DUX3	Q96PT4	197 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	CGREF1	Q99674	301 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	MYLK2	Q9H1R3	596 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	TMBIM4	Q9HC24	238 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	BAG5	Q9UL15	447 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	B9D1	Q9UPM9	204 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	IER3IP1	Q9Y5U9	82 aa		9.37	□□□□□ -0.91
CLK3-222	ENST00000568232	FRAS1	Q86XX4	4008 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	IGKV1D-17	A0A075B6S4	117 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232		J3KTA2	159 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	ARG1	P05089	322 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	ECI1	P42126	302 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	RPS27	P42677	84 aa	Known RBP	9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	NFYC	Q13952	458 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	TMEM200B	Q69YZ2	307 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	PGM2L1	Q6PCE3	622 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	C8orf86	Q6ZUL3	223 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	OR6V1	Q8N148	313 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	SVOP	Q8N4V2	548 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	OR51D1	Q8NGF3	324 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	OR5K1	Q8NHB7	308 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	SPTSSA	Q969W0	71 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	TLCD1	Q96CP7	247 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	MALSU1	Q96EH3	234 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	TLNRD1	Q9H1K6	362 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	NRIP3	Q9NQ35	241 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	CYB5R1	Q9UHQ9	305 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	SNX13	Q9Y5W8	968 aa		9.36	□□□□□ -0.91
CLK3-222	ENST00000568232	RYR1	P21817	5038 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	PLEC	Q15149	4684 aa	Known RBP	9.35	□□□□□ -0.91
CLK3-222	ENST00000568232		A0A087WUU8	490 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	OR2AT4	A6NND4	320 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	PTP4A3	O75365	173 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	CRABP1	P29762	137 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	SLC25A1	P53007	311 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	ABCA11P	Q4W5N1	156 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	GPR139	Q6DWJ6	353 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	TMPRSS11F	Q6ZWK6	438 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	ADCK1	Q86TW2	530 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	OR4M1	Q8NGD0	313 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	PRRC1	Q96M27	445 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	EBF4	Q9BQW3	602 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	NLK	Q9UBE8	527 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	HILPDA	Q9Y5L2	63 aa		9.35	□□□□□ -0.91
CLK3-222	ENST00000568232	LOC100996750	A0A140TA64	210 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	ODF3B	A8MYP8	253 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	FFAR1	O14842	300 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	TIPRL	O75663	272 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	NDUFB2	O95178	105 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	SNRNP70	P08621	437 aa	Known RBP	9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	PSG2	P11465	335 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	CD24	P25063	80 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	PRKX	P51817	358 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	CAPZA1	P52907	286 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	FXYD6P3	P58550	94 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	RPL23A	P62750	156 aa	Known RBP	9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	RPL31	P62899	125 aa	Known RBP	9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	FAM3A	P98173	230 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	ZNF273	Q14593	569 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	ZNF730	Q6ZMV8	503 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	MBOAT2	Q6ZWT7	520 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	SLC16A9	Q7RTY1	509 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	ZNF329	Q86UD4	541 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	DPP10	Q8N608	796 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	OR10Z1	Q8NGY1	313 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	BCAS4	Q8TDM0	211 aa		9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	FOXRED1	Q96CU9	486 aa	Predicted RBP	9.34	□□□□□ -0.91
CLK3-222	ENST00000568232	TPD52L3	Q96J77	140 aa		9.34	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms