RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 COMMD2Q86X83 199 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 ZNF679Q8IYX0 411 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 OR5P3Q8WZ94 311 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 RPL3LQ92901 407 aaKnown RBP17.2■□□□□ 0.34
CLN3-219ENST00000565778 PKP2Q99959 881 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 TTTY10Q9BZA0 68 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 KAAG1Q9UBP8 84 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 IKZF2Q9UKS7 526 aa17.2■□□□□ 0.34
CLN3-219ENST00000565778 DOCK11Q5JSL3 2073 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 M0R129 80 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 EPHA2P29317 976 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 RIDAP52758 137 aaKnown RBP17.19■□□□□ 0.34
CLN3-219ENST00000565778 SLX4IPQ5VYV7 408 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 KDM4DQ6B0I6 523 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 BRD3OSQ6XYD6 125 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 ZDHHC23Q8IYP9 409 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 OR5T2Q8NGG2 359 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 LRTOMTQ8WZ04 291 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 ST8SIA4Q92187 359 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 SLC25A28Q96A46 364 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 SEH1LQ96EE3 360 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 OR8B4Q96RC9 309 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 IL4I1Q96RQ9 567 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 CNN2Q99439 309 aaKnown RBP17.19■□□□□ 0.34
CLN3-219ENST00000565778 PBOV1Q9GZY1 135 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 TLNRD1Q9H1K6 362 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 FAM206AQ9NX38 181 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 COPS3Q9UNS2 423 aa17.19■□□□□ 0.34
CLN3-219ENST00000565778 A0A0U1RQV5 110 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 TMEM210A6NLX4 147 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 ZAR1LA6NP61 321 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 P2RY10O00398 339 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 ECDO95905 644 aaPredicted RBP17.18■□□□□ 0.34
CLN3-219ENST00000565778 SFTPBP07988 381 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 FCGR1AP12314 374 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 DCTDP32321 178 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 BPIFB3P59826 476 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 ACTR3P61158 418 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 ARF6P62330 175 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 ELF3P78545 371 aaPredicted RBP17.18■□□□□ 0.34
CLN3-219ENST00000565778 EFNB1P98172 346 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 ROM1Q03395 351 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 WDR38Q5JTN6 314 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 METTL11BQ5VVY1 283 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 SLC36A1Q7Z2H8 476 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 THAP5Q7Z6K1 395 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 SCCPDHQ8NBX0 429 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 TMEM163Q8TC26 289 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 ZDHHC16Q969W1 377 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 DUS3LQ96G46 650 aaKnown RBP17.18■□□□□ 0.34
CLN3-219ENST00000565778 C1orf147Q96MC9 270 aaPredicted RBP17.18■□□□□ 0.34
CLN3-219ENST00000565778 WDFY2Q96P53 400 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 ZMAT3Q9HA38 289 aaKnown RBP17.18■□□□□ 0.34
CLN3-219ENST00000565778 DNAJB11Q9UBS4 358 aa17.18■□□□□ 0.34
CLN3-219ENST00000565778 ZNF816-ZNF321PA0A0X1KG74 233 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 SLC22A31A6NKX4 558 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 CIB2O75838 187 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 HKR1P10072 659 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 SLC9A3R2Q15599 337 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 C11orf91Q3C1V1 193 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 ZNF829Q3KNS6 432 aaPredicted RBP17.17■□□□□ 0.34
CLN3-219ENST00000565778 AADACL4Q5VUY2 407 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 NXNL2Q5VZ03 156 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 C12orf73Q69YU5 71 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 OR10Z1Q8NGY1 313 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 OR51E1Q8TCB6 317 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 PPP1R14AQ96A00 147 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 FAM71F1Q96KD3 344 aaPredicted RBP17.17■□□□□ 0.34
CLN3-219ENST00000565778 APOL4Q9BPW4 351 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 SEMA6AQ9H2E6 1030 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 CNTD2Q9H8S5 307 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 HAO2Q9NYQ3 351 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 ENOPH1Q9UHY7 261 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 GTF2A1LQ9UNN4 478 aa17.17■□□□□ 0.34
CLN3-219ENST00000565778 MDFIC2A0A1B0GVS7 189 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 PRR32B1ATL7 298 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 SRRM5B3KS81 715 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.16■□□□□ 0.34
CLN3-219ENST00000565778 AKR7A2O43488 359 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 NDUFB3O43676 98 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 FCN3O75636 299 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 ATP6V1B1P15313 513 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 GPM6AP51674 278 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 CXCR4P61073 352 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 RIPPLY1Q0D2K3 151 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 FOXL1Q12952 345 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 DEFB112Q30KQ8 113 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 AWAT1Q58HT5 328 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 FAM76BQ5HYJ3 339 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 CEP78Q5JTW2 689 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 ZNF322Q6U7Q0 402 aaPredicted RBP17.16■□□□□ 0.34
CLN3-219ENST00000565778 MOB3CQ70IA8 216 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 SLC35F2Q8IXU6 374 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 ITFG2Q969R8 447 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 C12orf43Q96C57 262 aaKnown RBP17.16■□□□□ 0.34
CLN3-219ENST00000565778 MNTQ99583 582 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 GABARAPL1Q9H0R8 117 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 WDR13Q9H1Z4 485 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 GPR84Q9NQS5 396 aa17.16■□□□□ 0.34
CLN3-219ENST00000565778 SNTG1Q9NSN8 517 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms