RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 CCDC86Q9H6F5 360 aaKnown RBP6.56□□□□□ -1.36
VPS39-204ENST00000561818 HRASLSQ9HDD0 168 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 B3GNT2Q9NY97 397 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 DLL3Q9NYJ7 618 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 MGAT4AQ9UM21 535 aa6.56□□□□□ -1.36
VPS39-204ENST00000561818 EP300Q09472 2414 aaPredicted RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 LINC00854A0A1B0GVQ3 168 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 FAM172BPA6NC97 362 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 MBD3L4A6NDZ8 208 aaPredicted RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 MBD3L3A6NE82 208 aaPredicted RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 MBD3L5A6NJ08 208 aaPredicted RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 RAB27BO00194 218 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 EFSO43281 561 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 CDC14BO60729 498 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 CRTAPO75718 401 aaPredicted RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 RAB3DO95716 219 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 FCER2P06734 321 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 GSTT2P0CG29 244 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 VSIG8P0DPA2 414 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 CD79AP11912 226 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 COX5AP20674 150 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 TIMP3P35625 211 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 PER3P56645 1201 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 CLDN12P56749 244 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 GMFBP60983 142 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 RAB1AP62820 205 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 RPS27AP62979 156 aaKnown RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 QRFPP83859 136 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 FGL1Q08830 312 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 RSU1Q15404 277 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 GUSBP1Q15486 140 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 KCNJ8Q15842 424 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 SRSF7Q16629 238 aaKnown RBP eCLIP6.55□□□□□ -1.36
VPS39-204ENST00000561818 MPV17LQ2QL34 196 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 TBRG1Q3YBR2 411 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 ZNF260Q3ZCT1 412 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 PLEKHN1Q494U1 663 aaPredicted RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 VAX1Q5SQQ9 334 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 ASPHD2Q6ICH7 369 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 LIN54Q6MZP7 749 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 ZNF774Q6NX45 483 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 FIP1L1Q6UN15 594 aaKnown RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 TFAP2EQ6VUC0 442 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 ZNF573Q86YE8 665 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 SKA3Q8IX90 412 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 ZDHHC23Q8IYP9 409 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 OR5AS1Q8N127 324 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 CELF2-AS1Q8N7Q2 184 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 SPERTQ8NA61 448 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 OR5A2Q8NGI9 324 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 OR4D6Q8NGJ1 314 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 MBD3L2Q8NHZ7 208 aaPredicted RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 TNFAIP8L1Q8WVP5 186 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 GTF3AQ92664 365 aaKnown RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 SGK3Q96BR1 496 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 VRK1Q99986 396 aaPredicted RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 DHRS9Q9BPW9 319 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 SLX1AQ9BQ83 275 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 OCSTAMPQ9BR26 566 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 REPIN1Q9BWE0 567 aaKnown RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 SFXN3Q9BWM7 321 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 HES7Q9BYE0 225 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 BCL2L14Q9BZR8 327 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 OR51J1Q9H342 316 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 PIGMQ9H3S5 423 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 RIMS4Q9H426 269 aaPredicted RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 CDH20Q9HBT6 801 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 NKIRAS2Q9NYR9 191 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 MRPL15Q9P015 296 aaKnown RBP6.55□□□□□ -1.36
VPS39-204ENST00000561818 POLDIP2Q9Y2S7 368 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 SPEF1Q9Y4P9 236 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 CACNA1GO43497 2377 aa6.55□□□□□ -1.36
VPS39-204ENST00000561818 CNTRLQ7Z7A1 2325 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 ALPK2Q86TB3 2170 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 A0A0B4J203 849 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 TMEM210A6NLX4 147 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 SSNA1O43805 119 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 GMDSO60547 372 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 MPIG6BO95866 241 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 IL18BPO95998 194 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 F10P00742 488 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 IL2RAP01589 272 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 C1QBP02746 253 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 CELA3AP09093 270 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 TMEM225BP0DP42 221 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 SLC2A1P11166 492 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 SFTPCP11686 197 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 ABOP16442 354 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 MGMTP16455 207 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 NAT1P18440 290 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 RAD52P43351 418 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 TMPRSS3P57727 454 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 RAP2BP61225 183 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 RPS23P62266 143 aaKnown RBP6.54□□□□□ -1.36
VPS39-204ENST00000561818 FAM3AP98173 230 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 GABRA6Q16445 453 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 CEACAM21Q3KPI0 293 aa6.54□□□□□ -1.36
VPS39-204ENST00000561818 ACSF3Q4G176 576 aaPredicted RBP6.54□□□□□ -1.36
VPS39-204ENST00000561818 FBXW12Q6X9E4 464 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 108.7 ms