RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 GPX7Q96SL4 187 aaPredicted RBP10.05□□□□□ -0.8
LDLR-208ENST00000558518 PLEKHJ1Q9NW61 149 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 IGLV1-36A0A0B4J1U3 117 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 KLK3P07288 261 aaPredicted RBP10.05□□□□□ -0.8
LDLR-208ENST00000558518 SMIM6P0DI80 62 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 THEGLP0DJG4 465 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 CD37P11049 281 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 TUBG1P23258 451 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 P2RY4P51582 365 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 DVL1P1P54792 670 aaPredicted RBP10.05□□□□□ -0.8
LDLR-208ENST00000558518 NHLH2Q02577 135 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 SOHLH1Q5JUK2 328 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 SLC25A24Q6NUK1 477 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 LANCL3Q6ZV70 420 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 ZNF383Q8NA42 475 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 EDEM2Q9BV94 578 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 S1PR5Q9H228 398 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 COPS7AQ9UBW8 275 aa10.05□□□□□ -0.8
LDLR-208ENST00000558518 BGLAPP02818 100 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 PPP1CCP36873 323 aaKnown RBP10.04□□□□□ -0.8
LDLR-208ENST00000558518 EIF2S3P41091 472 aaKnown RBP10.04□□□□□ -0.8
LDLR-208ENST00000558518 FOXK1P85037 733 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 RPUSD3Q6P087 351 aaKnown RBP10.04□□□□□ -0.8
LDLR-208ENST00000558518 DNM1P46Q6ZS02 220 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 C1QL2Q7Z5L3 287 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 SUMF2Q8NBJ7 301 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 ADAMTS17Q8TE56 1095 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 THRSPQ92748 146 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 TOLLIPQ9H0E2 274 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 NELFAQ9H3P2 528 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 G6PC2Q9NQR9 355 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 SLC17A5Q9NRA2 495 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 A0A0A6YYD4 124 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 TNFSF14O43557 240 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 MT-ND4LP03901 98 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 QDPRP09417 244 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 FCGR2AP12318 317 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 ANOS1P23352 680 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 SLC37A1P57057 533 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 SSBP1Q04837 148 aaKnown RBP10.04□□□□□ -0.8
LDLR-208ENST00000558518 ECH1Q13011 328 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 MFAP5Q13361 173 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 SGCBQ16585 318 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 EMC4Q5J8M3 183 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 SPIN3Q5JUX0 258 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 HOGA1Q86XE5 327 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 SGPP2Q8IWX5 399 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 RPS4Y2Q8TD47 263 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 LMX1AQ8TE12 382 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 CA5BP1Q8WTZ4 195 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 PTPMT1Q8WUK0 201 aaPredicted RBP10.04□□□□□ -0.8
LDLR-208ENST00000558518 TPSD1Q9BZJ3 242 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 SLC5A7Q9GZV3 580 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 WWTR1Q9GZV5 400 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 SUSD2Q9UGT4 822 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 FRYLO94915 3013 aa10.04□□□□□ -0.8
LDLR-208ENST00000558518 A0A1B0GV90 55 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 FAM230AA0A1W2PPH8 454 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 HIST1H1DP16402 221 aaKnown RBP10.03□□□□□ -0.8
LDLR-208ENST00000558518 SLC26A5P58743 744 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 TSC22D1Q15714 1073 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 TAF9Q16594 264 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 DEFB133Q30KQ1 61 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 FAM166AQ6J272 317 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 EDARADDQ8WWZ3 215 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 DAZLQ92904 295 aaKnown RBP10.03□□□□□ -0.8
LDLR-208ENST00000558518 PGAM5Q96HS1 289 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 URM1Q9BTM9 101 aaKnown RBP10.03□□□□□ -0.8
LDLR-208ENST00000558518 NMES1Q9C002 83 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 LPAR5Q9H1C0 372 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 WBP1LQ9NX94 342 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 KLRF1Q9NZS2 232 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 CACFD1Q9UGQ2 172 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 B3GALT5Q9Y2C3 310 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 KPTNQ9Y664 436 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 C5orf52A6NGY3 159 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 ONECUT2O95948 504 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 HKR1P10072 659 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 FAHP16930 419 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 TAGLN2P37802 199 aaKnown RBP10.03□□□□□ -0.8
LDLR-208ENST00000558518 ZNF121P58317 390 aaPredicted RBP10.03□□□□□ -0.8
LDLR-208ENST00000558518 SUPT4H1P63272 117 aaKnown RBP10.03□□□□□ -0.8
LDLR-208ENST00000558518 SKA3Q8IX90 412 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 NKAIN3Q8N8D7 197 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 STT3BQ8TCJ2 826 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 MRGPRX1Q96LB2 322 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 SLC26A1Q9H2B4 701 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 FAM212BQ9NTI7 297 aaPredicted RBP10.03□□□□□ -0.8
LDLR-208ENST00000558518 TINAGQ9UJW2 476 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 GPR132Q9UNW8 380 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 IGHV5-51A0A0C4DH38 117 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 A8MVM7 634 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 PLPP3O14495 311 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 OR8U8P0C7N1 319 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 LINC00271P0C7V0 271 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 ZNF84P51523 738 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 SCAND1P57086 179 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 TEX30Q5JUR7 227 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 GFI1BQ5VTD9 330 aa10.03□□□□□ -0.8
LDLR-208ENST00000558518 GGNBP1Q5YKI7 109 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms