RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 LHFPL6Q9Y693 200 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 A0A0C4DFX4 3053 aa14.38□□□□□ -0.11
SHMT2-232ENST00000557487 ALPK2Q86TB3 2170 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 C1orf196B1AJZ1 125 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 RRP8O43159 456 aaKnown RBP14.37□□□□□ -0.11
SHMT2-232ENST00000557487 CRTAPO75718 401 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-232ENST00000557487 RAD51DO75771 328 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 PTAFRP25105 342 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 PMELP40967 661 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 CLRN1P58418 232 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 STARD6P59095 220 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 RNF4P78317 190 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 GABREP78334 506 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 ECH1Q13011 328 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 RPL7L1Q6DKI1 246 aaKnown RBP14.37□□□□□ -0.11
SHMT2-232ENST00000557487 COMMD2Q86X83 199 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 UEVLDQ8IX04 471 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 OR8B12Q8NGG6 310 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 LMX1AQ8TE12 382 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 ROBO4Q8WZ75 1007 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 KIRREL1Q96J84 757 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 GPER1Q99527 375 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 CMSS1Q9BQ75 279 aaKnown RBP14.37□□□□□ -0.11
SHMT2-232ENST00000557487 TCEAL7Q9BRU2 100 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 VN1R1Q9GZP7 353 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 GPR84Q9NQS5 396 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 DHCR7Q9UBM7 475 aaKnown RBP14.37□□□□□ -0.11
SHMT2-232ENST00000557487 TUBD1Q9UJT1 453 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 FAM96BQ9Y3D0 163 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 PCDHGA1Q9Y5H4 931 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 BDP1A6H8Y1 2624 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 A0A1B0GX78 115 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 FOXI3A8MTJ6 420 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-232ENST00000557487 K7EPK0 472 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 ZNF354AO60765 605 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-232ENST00000557487 F12P00748 615 aaPredicted RBP14.37□□□□□ -0.11
SHMT2-232ENST00000557487 IFNA21P01568 189 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 RPL12P30050 165 aaKnown RBP14.37□□□□□ -0.11
SHMT2-232ENST00000557487 SNU13P55769 128 aaKnown RBP14.37□□□□□ -0.11
SHMT2-232ENST00000557487 S100A10P60903 97 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 OGFOD3Q6PK18 319 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 FAM71E2Q8N5Q1 922 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 SNIP1Q8TAD8 396 aaKnown RBP14.37□□□□□ -0.11
SHMT2-232ENST00000557487 WNT2BQ93097 391 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 SHDQ96IW2 340 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 TM2D1Q9BX74 207 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 EHFQ9NZC4 300 aa14.37□□□□□ -0.11
SHMT2-232ENST00000557487 FAM157AC9JC47 383 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 S100A9P06702 114 aaKnown RBP14.36□□□□□ -0.11
SHMT2-232ENST00000557487 NR2C1P13056 603 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 CTSSP25774 331 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 KCNJ3P48549 501 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 EFNA3P52797 238 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 ZNF121P58317 390 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-232ENST00000557487 CHRFAM7AQ494W8 412 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 SLC25A47Q6Q0C1 308 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 WDFY1Q8IWB7 410 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 UBAC2Q8NBM4 344 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 OR51T1Q8NGJ9 327 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 OR51F2Q8NH61 342 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 FNDC9Q8TBE3 224 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 RNF138Q8WVD3 245 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 LRFN3Q9BTN0 628 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 BANF2Q9H503 90 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 SDHAF3Q9NRP4 125 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 FAM212BQ9NTI7 297 aaPredicted RBP14.36□□□□□ -0.11
SHMT2-232ENST00000557487 B3GAT1Q9P2W7 334 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 TECTAO75443 2155 aa14.36□□□□□ -0.11
SHMT2-232ENST00000557487 DEDDO75618 318 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 MT-ND4LP03901 98 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 CTSDP07339 412 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-232ENST00000557487 PGA4P0DJD7 388 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 PGA3P0DJD8 388 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 NAT2P11245 290 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 ZNF708P17019 499 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 NFYBP25208 207 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 THBS4P35443 961 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 C14orf28Q4W4Y0 310 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 D2HGDHQ8N465 521 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 ZNF561Q8N587 486 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 OR6X1Q8NH79 312 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 OR1L3Q8NH93 324 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 SLC25A43Q8WUT9 341 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-232ENST00000557487 ZNF775Q96BV0 537 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-232ENST00000557487 GSKIPQ9P0R6 139 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 CACFD1Q9UGQ2 172 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 CA14Q9ULX7 337 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 RHPN2P1A8MT19 583 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 NME2P22392 152 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 GLRA1P23415 457 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 DHPSP49366 369 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-232ENST00000557487 UCP2P55851 309 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 FOXF1Q12946 379 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 RBM39Q14498 530 aaKnown RBP14.35□□□□□ -0.11
SHMT2-232ENST00000557487 HABP2Q14520 560 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-232ENST00000557487 IAH1Q2TAA2 248 aaPredicted RBP14.35□□□□□ -0.11
SHMT2-232ENST00000557487 SLC16A14Q7RTX9 510 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 SGPP2Q8IWX5 399 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 OR9K2Q8NGE7 335 aa14.35□□□□□ -0.11
SHMT2-232ENST00000557487 OR14K1Q8NGZ2 314 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms