RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 PRO1933Q9H354 126 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF581Q9P0T4 197 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 DMRT1Q9Y5R6 373 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 CPAMD8Q8IZJ3 1885 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 WDFY4Q6ZS81 3184 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 NCOA6Q14686 2063 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 KIR2DS5A0A0G2JLQ3 304 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 A0A0G2JNG1 304 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM269A0A1B0GVZ9 245 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 EPOPA6NHQ4 379 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 UMAD1C9J7I0 102 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 KIR2DS3K7RE56 304 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 HOXC4P09017 264 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF823P16415 610 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 GABRG2P18507 467 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 FSTP19883 344 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 MPZP25189 248 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ITGA3P26006 1051 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 FCGR2CP31995 323 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 GLP1RP43220 463 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 TNFRSF4P43489 277 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 RIDAP52758 137 aaKnown RBP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 NDUFA6P56556 154 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF117Q03924 483 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 HYAL1Q12794 435 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 KIR2DS5Q14953 304 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 GUK1Q16774 197 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 HAGHQ16775 308 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ACTBL2Q562R1 376 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 PHF19Q5T6S3 580 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 FAHD2BQ6P2I3 314 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 C16orf47Q6ZP98 133 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ARHGEF39Q8N4T4 335 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 OR5D18Q8NGL1 313 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF519Q8TB69 540 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ST7LQ8TDW4 575 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 FAHD2AQ96GK7 314 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 REEP6Q96HR9 211 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM41AQ96HV5 264 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ARHGAP5-AS1Q96IT6 56 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 OR5B2Q96R09 309 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 MESP1Q9BRJ9 268 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 NUDT22Q9BRQ3 303 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 LPAR5Q9H1C0 372 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 DUSP15Q9H1R2 295 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 PARP11Q9NR21 331 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF319Q9P2F9 582 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 PRODH2Q9UF12 536 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 OR52A1Q9UKL2 312 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 HHLA2Q9UM44 414 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 HDGFL3Q9Y3E1 203 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 PUS1Q9Y606 427 aaKnown RBP eCLIP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 HS3ST3B1Q9Y662 390 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM14AQ9Y6G1 99 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 CEP250Q9BV73 2442 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 SPTBN2O15020 2390 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 A6NCN8 305 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 MSTNO14793 375 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 XRCC2O43543 280 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 TTRP02766 147 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 SOD3P08294 240 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 GP1BBP13224 206 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 KLK2P20151 261 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 RPL12P30050 165 aaKnown RBP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 PTGER4P35408 488 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 NOVA1P51513 510 aaKnown RBP4.29□□□□□ -1.72
LIMA1-214ENST00000552783 EFNA3P52797 238 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 GAMTQ14353 236 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 SP6Q3SY56 376 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 CYB5R2Q6BCY4 276 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 C1QL2Q7Z5L3 287 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 OR52N5Q8NH56 324 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 NTNG2Q96CW9 530 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 GPR61Q9BZJ8 451 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 CHST5Q9GZS9 411 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 TMPRSS5Q9H3S3 457 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 LIME1Q9H400 295 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 RGCCQ9H4X1 137 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 UBQLN4Q9NRR5 601 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 OBP2AQ9NY56 170 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 TREM2Q9NZC2 230 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 DOK5Q9P104 306 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 RAB22AQ9UL26 194 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 ZDHHC8Q9ULC8 765 aa4.29□□□□□ -1.72
LIMA1-214ENST00000552783 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 NUDT19A8MXV4 375 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 E9PLN8 166 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 AHSA1O95433 338 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 TSPAN15O95858 294 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 MPIG6BO95866 241 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 SCGB1D2O95969 90 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 CD63P08962 238 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 HOXA5P20719 270 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 DRD1P21728 446 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 PLA2G5P39877 138 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 RPS10P46783 165 aaKnown RBP4.28□□□□□ -1.72
LIMA1-214ENST00000552783 EMP2P54851 167 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 ERVFRD-1P60508 538 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 ACY1Q03154 408 aa4.28□□□□□ -1.72
LIMA1-214ENST00000552783 KIAA0141Q14154 515 aaPredicted RBP4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms