RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 OR5P3Q8WZ94 311 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 FBXW5Q969U6 566 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 C12orf43Q96C57 262 aaKnown RBP8.17□□□□□ -1.1
LIMA1-211ENST00000552338 FOXRED1Q96CU9 486 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-211ENST00000552338 ITPKCQ96DU7 683 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 DIRC2Q96SL1 478 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 PLEKHF2Q9H8W4 249 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 NEK6Q9HC98 313 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 TMEM138Q9NPI0 162 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 TMEM100Q9NV29 134 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 RSL24D1Q9UHA3 163 aaKnown RBP8.17□□□□□ -1.1
LIMA1-211ENST00000552338 GPR160Q9UJ42 338 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 ZDHHC8Q9ULC8 765 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 N6AMT1Q9Y5N5 214 aa8.17□□□□□ -1.1
LIMA1-211ENST00000552338 TRAV8-7A0A075B6U6 113 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 A0A0G2JK05 382 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 OR5B21A6NL26 309 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 TMEM210A6NLX4 147 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 ANKRD30BLA7E2S9 258 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 PDCD5O14737 125 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 LILRA1O75019 489 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 ERCC1P07992 297 aaPredicted RBP8.16□□□□□ -1.1
LIMA1-211ENST00000552338 OR4A8P0C604 315 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 ADRA2CP18825 462 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 RAB3AP20336 220 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 PRKACBP22694 351 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 CALRP27797 417 aaKnown RBP8.16□□□□□ -1.1
LIMA1-211ENST00000552338 BDKRB2P30411 391 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 CFHR2P36980 270 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 CD200P41217 278 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 GATA4P43694 442 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 SOX2P48431 317 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 FUT6P51993 359 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 SCAND1P57086 179 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 RIN1Q13671 783 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 SPTAN1Q13813 2472 aaKnown RBP8.16□□□□□ -1.1
LIMA1-211ENST00000552338 FLNCQ14315 2725 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 CNN3Q15417 329 aaKnown RBP8.16□□□□□ -1.1
LIMA1-211ENST00000552338 C1orf100Q5SVJ3 147 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 SPATA46Q5T0L3 261 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 ASCL4Q6XD76 172 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 USP43Q70EL4 1123 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 LRP11Q86VZ4 500 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 COMMD2Q86X83 199 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 Q8NFD4 153 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 OR1M1Q8NGA1 313 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 HPSE2Q8WWQ2 592 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 GFI1Q99684 422 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 UQCC2Q9BRT2 126 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 TLNRD1Q9H1K6 362 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 MS4A5Q9H3V2 200 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 RNF167Q9H6Y7 350 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 PLEKHA1Q9HB21 404 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 TCF7L1Q9HCS4 588 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 MYEF2Q9P2K5 600 aaKnown RBP8.16□□□□□ -1.1
LIMA1-211ENST00000552338 CKLFQ9UBR5 152 aa8.16□□□□□ -1.1
LIMA1-211ENST00000552338 PQLC2LA1A4F0 135 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 C17orf100A8MU93 164 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 MLNRO43193 412 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 TIMM8AO60220 97 aaPredicted RBP8.15□□□□□ -1.1
LIMA1-211ENST00000552338 CD8AP01732 235 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 NAT2P11245 290 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 COX6B1P14854 86 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 ZNF20P17024 532 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 RAB3BP20337 219 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 MYL9P24844 172 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 MPZP25189 248 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 SDC2P34741 201 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 GNALP38405 381 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 RPS19P39019 145 aaKnown RBP8.15□□□□□ -1.1
LIMA1-211ENST00000552338 PPOXP50336 477 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 VBP1P61758 197 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 NCS1P62166 190 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 PPP3R1P63098 170 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 MZT1Q08AG7 82 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 PRDX4Q13162 271 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 GFOD2Q3B7J2 385 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 ALKBH2Q6NS38 261 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 C20orf204Q6ZNR8 217 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 LHFPL2Q6ZUX7 228 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 NR2C2APQ86WQ0 139 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 ZDHHC23Q8IYP9 409 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 MUC15Q8N387 334 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 ZSCAN4Q8NAM6 433 aaPredicted RBP8.15□□□□□ -1.1
LIMA1-211ENST00000552338 OR51A2Q8NGJ7 313 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 DYNC2LI1Q8TCX1 351 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 PIGCQ92535 297 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 NEUROG1Q92886 237 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 ERGIC1Q969X5 290 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 SLC25A46Q96AG3 418 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 POM121Q96HA1 1249 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 TRAF4Q9BUZ4 470 aaPredicted RBP8.15□□□□□ -1.1
LIMA1-211ENST00000552338 MRI1Q9BV20 369 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 FGF23Q9GZV9 251 aaPredicted RBP8.15□□□□□ -1.1
LIMA1-211ENST00000552338 SLITRK2Q9H156 845 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 OR51B6Q9H340 312 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 METTL17Q9H7H0 456 aaPredicted RBP8.15□□□□□ -1.1
LIMA1-211ENST00000552338 RHOFQ9HBH0 211 aa8.15□□□□□ -1.1
LIMA1-211ENST00000552338 EXOSC4Q9NPD3 245 aaKnown RBP8.15□□□□□ -1.1
LIMA1-211ENST00000552338 CBLN4Q9NTU7 201 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms