RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 TUSC2O75896 110 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 PLXDC2Q6UX71 529 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 SLC26A10Q8NG04 563 aa13.32□□□□□ -0.28
CUX1-214ENST00000550008 SIRPB1O00241 398 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 LMX1BO60663 402 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 B3GALNT1O75752 331 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 HES3Q5TGS1 186 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 SNIP1Q8TAD8 396 aaKnown RBP13.31□□□□□ -0.28
CUX1-214ENST00000550008 NECAP2Q9NVZ3 263 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 LHX6Q9UPM6 363 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 XRCC2O43543 280 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 WDR1O75083 606 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 WNT11O96014 354 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 EDDM3BP56851 147 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 EGR4Q05215 589 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 TRA2AQ13595 282 aaKnown RBP eCLIP13.31□□□□□ -0.28
CUX1-214ENST00000550008 PABPC1L2AQ5JQF8 200 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 GALNT16Q8N428 558 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 KCNE4Q8WWG9 221 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 ZNF649Q9BS31 505 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 SUCNR1Q9BXA5 334 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 H3BUI4 141 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 LGALS8O00214 317 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 PIN1P1O15428 100 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 CAMK2BQ13554 666 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 OR2M3Q8NG83 312 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 INTS12Q96CB8 462 aaKnown RBP13.31□□□□□ -0.28
CUX1-214ENST00000550008 SDSLQ96GA7 329 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 PLPPR2Q96GM1 343 aa13.31□□□□□ -0.28
CUX1-214ENST00000550008 S100A2P29034 98 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 GPM6AP51674 278 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 ZNF133P52736 654 aaPredicted RBP13.3□□□□□ -0.28
CUX1-214ENST00000550008 DHRS2Q13268 280 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 FLVCR1-AS1Q8TAF5 88 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 ADAT3Q96EY9 351 aaPredicted RBP13.3□□□□□ -0.28
CUX1-214ENST00000550008 FAAP24Q9BTP7 215 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 RAB27BO00194 218 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 SOCS1O15524 211 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 IFNA2P01563 188 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 PTGFRP43088 359 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 CXorf67Q86X51 503 aaPredicted RBP13.3□□□□□ -0.28
CUX1-214ENST00000550008 DEFB108BQ8NET1 73 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 OR56B2PQ8NGI1 322 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 RBPMSQ93062 196 aaKnown RBP13.3□□□□□ -0.28
CUX1-214ENST00000550008 KISS1RQ969F8 398 aaPredicted RBP13.3□□□□□ -0.28
CUX1-214ENST00000550008 CPNE4Q96A23 557 aaPredicted RBP13.3□□□□□ -0.28
CUX1-214ENST00000550008 FLVCR1Q9Y5Y0 555 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 PKDREJQ9NTG1 2253 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 SNRNP200O75643 2136 aaKnown RBP13.3□□□□□ -0.28
CUX1-214ENST00000550008 DEGS1O15121 323 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 ANKRD34CP0C6C1 535 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 PPP1R1AQ13522 171 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 DEGS2Q6QHC5 323 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 TERB2Q8NHR7 220 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 TMEM231Q9H6L2 316 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 DLL4Q9NR61 685 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 SNRPGP15A8MWD9 76 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 ZNF732B4DXR9 585 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 PSMB6P28072 239 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 SHEQ5VZ18 495 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 OR4D10Q8NGI6 311 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 FAM213BQ8TBF2 198 aa13.3□□□□□ -0.28
CUX1-214ENST00000550008 A0A1W2PP11 408 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 SLC22A20A6NK97 555 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 SERPINA7P05543 415 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 RSPO4Q2I0M5 234 aaPredicted RBP13.29□□□□□ -0.28
CUX1-214ENST00000550008 ISXQ2M1V0 245 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 TBC1D28Q2M2D7 210 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 PXT1Q8NFP0 134 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 OR6X1Q8NH79 312 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 CHAC2Q8WUX2 184 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 RPS10P5Q9NQ39 176 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 OR6C6A6NF89 314 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 TMEM200CA6NKL6 621 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 ZNF14P17017 642 aaPredicted RBP13.29□□□□□ -0.28
CUX1-214ENST00000550008 OR11H7Q8NGC8 314 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 UBL7Q96S82 380 aaPredicted RBP13.29□□□□□ -0.28
CUX1-214ENST00000550008 FAM173AQ9BQD7 235 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 MAGT1Q9H0U3 335 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 ANKRD20A5PA0PJZ0 165 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 KLF4O43474 513 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 RAB5BP61020 215 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 PLPPR5Q32ZL2 321 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 CD200R1LQ6Q8B3 271 aa13.29□□□□□ -0.28
CUX1-214ENST00000550008 ESRP2Q9H6T0 727 aaKnown RBP13.29□□□□□ -0.28
CUX1-214ENST00000550008 A0A087WV48 116 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 SNRNP70P08621 437 aaKnown RBP13.28□□□□□ -0.28
CUX1-214ENST00000550008 GLRA1P23415 457 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 STARD6P59095 220 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 SIGLEC14Q08ET2 396 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 OR2T2Q6IF00 324 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 DNASE2BQ8WZ79 361 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 SLC39A7Q92504 469 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 CHST6Q9GZX3 395 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 KCNJ16Q9NPI9 418 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 ZFP57Q9NU63 452 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 SDHAF2Q9NX18 166 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 A0A0J9YW62 118 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 ADAM10O14672 748 aa13.28□□□□□ -0.28
CUX1-214ENST00000550008 IGKV3-11P04433 115 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms