RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 NXPH2O95156 264 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 IGHEP01854 428 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 OR2F1Q13607 317 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 ZNF362Q5T0B9 420 aaPredicted RBP13.92□□□□□ -0.18
CUX1-211ENST00000546411 H3F3CQ6NXT2 135 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 MAGT1Q9H0U3 335 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 C12orf10Q9HB07 376 aa13.92□□□□□ -0.18
CUX1-211ENST00000546411 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.91□□□□□ -0.18
CUX1-211ENST00000546411 RGS13O14921 159 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 S100A2P29034 98 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 PTGFRP43088 359 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 CLN3Q13286 438 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 Q5BKY6 102 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 DEGS2Q6QHC5 323 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 OR11G2Q8NGC1 345 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 NUBPLQ8TB37 319 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 UBL7Q96S82 380 aaPredicted RBP13.91□□□□□ -0.18
CUX1-211ENST00000546411 NELFAQ9H3P2 528 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 TAF9BQ9HBM6 251 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 A0A1W2PQD3 144 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 PRKACAP17612 351 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 PIGPP57054 158 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 PLXDC2Q6UX71 529 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 MFRPQ9BY79 579 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 FAM234AQ9H0X4 552 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 AKIRIN1Q9H9L7 192 aaPredicted RBP13.91□□□□□ -0.18
CUX1-211ENST00000546411 ZFP57Q9NU63 452 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 A0A0B4J293 547 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 A0A1W2PR80 420 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 KCNAB3O43448 404 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 TIAF1O95411 115 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 HLA-HP01893 362 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 HIST1H1DP16402 221 aaKnown RBP13.91□□□□□ -0.18
CUX1-211ENST00000546411 CD80P33681 288 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 ZNF133P52736 654 aaPredicted RBP13.91□□□□□ -0.18
CUX1-211ENST00000546411 CAMK2BQ13554 666 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 ACER2Q5QJU3 275 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 SEZ6L2Q6UXD5 910 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 CATSPERDQ86XM0 798 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 ZNF75AQ96N20 296 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 OCSTAMPQ9BR26 566 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 TSPAN2O60636 221 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 GSTP1P09211 210 aaKnown RBP13.91□□□□□ -0.18
CUX1-211ENST00000546411 GABRA2P47869 451 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 SPINK14Q6IE38 97 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 WDR74Q6RFH5 385 aaPredicted RBP13.91□□□□□ -0.18
CUX1-211ENST00000546411 RTN4IP1Q8WWV3 396 aaPredicted RBP13.91□□□□□ -0.18
CUX1-211ENST00000546411 RSPO3Q9BXY4 272 aaPredicted RBP13.91□□□□□ -0.18
CUX1-211ENST00000546411 LUZP4Q9P127 313 aa13.91□□□□□ -0.18
CUX1-211ENST00000546411 RPS4XP62701 263 aaKnown RBP13.9□□□□□ -0.18
CUX1-211ENST00000546411 TMEM128Q5BJH2 165 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 SHEQ5VZ18 495 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 OR11H4Q8NGC9 324 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 ADIPOR1Q96A54 375 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 ZNF385AQ96PM9 386 aaKnown RBP13.9□□□□□ -0.18
CUX1-211ENST00000546411 MRPL22Q9NWU5 206 aaKnown RBP13.9□□□□□ -0.18
CUX1-211ENST00000546411 PLXNA3P51805 1871 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 GSTZ1O43708 216 aaPredicted RBP13.9□□□□□ -0.18
CUX1-211ENST00000546411 GDF9O60383 454 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 ASCL1P50553 236 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 DMWDQ09019 674 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 C11orf87Q6NUJ2 197 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 SDSLQ96GA7 329 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 C7orf66A4D0T2 115 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 NME2P1O60361 137 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 WDR1O75083 606 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 TUSC2O75896 110 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 TNFSF15O95150 251 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 RRADP55042 308 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 RAB5BP61020 215 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 GGTLC2Q14390 218 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 OR2B11Q5JQS5 317 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 ATPAF1Q5TC12 328 aaPredicted RBP13.9□□□□□ -0.18
CUX1-211ENST00000546411 BAP18Q8IXM2 172 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 OR2V1Q8NHB1 315 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 EMG1Q92979 244 aaKnown RBP13.9□□□□□ -0.18
CUX1-211ENST00000546411 ZNF768Q9H5H4 540 aaKnown RBP13.9□□□□□ -0.18
CUX1-211ENST00000546411 NARFLQ9H6Q4 476 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 OPN4Q9UHM6 478 aa13.9□□□□□ -0.18
CUX1-211ENST00000546411 SCN8AQ9UQD0 1980 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 KLRC4-KLRK1H3BQV0 150 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 RHEBQ15382 184 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 MOGAT2Q3SYC2 334 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 CLLU1Q5K131 121 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 UBALD2Q8IYN6 164 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 FLVCR1-AS1Q8TAF5 88 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 VOPP1Q96AW1 172 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 SUCNR1Q9BXA5 334 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 FAM212BQ9NTI7 297 aaPredicted RBP13.89□□□□□ -0.19
CUX1-211ENST00000546411 R4GN57 208 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 MED19A0JLT2 244 aaPredicted RBP13.89□□□□□ -0.19
CUX1-211ENST00000546411 RFPL4AA6NLU0 287 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 RFPL4AL1F8VTS6 287 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 LRP3O75074 770 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 CBR1P16152 277 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 IL11RAQ14626 422 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 RSPO4Q2I0M5 234 aaPredicted RBP13.89□□□□□ -0.19
CUX1-211ENST00000546411 PAN3Q58A45 887 aaKnown RBP13.89□□□□□ -0.19
CUX1-211ENST00000546411 LGI3Q8N145 548 aa13.89□□□□□ -0.19
CUX1-211ENST00000546411 OR10D3Q8NH80 312 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms