RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 ONECUT1Q9UBC0 465 aa6.95□□□□□ -1.3
USP28-203ENST00000537490 PRPF19Q9UMS4 504 aaKnown RBP6.95□□□□□ -1.3
USP28-203ENST00000537490 TRRAPQ9Y4A5 3859 aa6.95□□□□□ -1.3
USP28-203ENST00000537490 WNK1Q9H4A3 2382 aa6.95□□□□□ -1.3
USP28-203ENST00000537490 ZNF850A8MQ14 1090 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 ATP8B1O43520 1251 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 SELENOFO60613 162 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 TIPRLO75663 272 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 CLPXO76031 633 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 APOC1P02654 83 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 H2BFMP0C1H6 154 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 CFL1P23528 166 aaKnown RBP6.94□□□□□ -1.3
USP28-203ENST00000537490 ACKR3P25106 362 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 GNALP38405 381 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 GNGT1P63211 74 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 IL5RAQ01344 420 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 PRDX4Q13162 271 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 KLRD1Q13241 179 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 TRIM25Q14258 630 aaKnown RBP6.94□□□□□ -1.3
USP28-203ENST00000537490 DGUOKQ16854 277 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 STUMQ69YW2 141 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 METAP1DQ6UB28 335 aaPredicted RBP6.94□□□□□ -1.3
USP28-203ENST00000537490 CD300LDQ6UXZ3 194 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 SHFQ7M4L6 423 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 DHFR2Q86XF0 187 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 PNKDQ8N490 385 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 ZSCAN4Q8NAM6 433 aaPredicted RBP6.94□□□□□ -1.3
USP28-203ENST00000537490 CSNK2A3Q8NEV1 391 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 OR52H1Q8NGJ2 320 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 OR10Z1Q8NGY1 313 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 TEX47Q8TBZ9 253 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 THEM6Q8WUY1 208 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 OR5P3Q8WZ94 311 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 PIGCQ92535 297 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 TNFRSF14Q92956 283 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 C12orf43Q96C57 262 aaKnown RBP6.94□□□□□ -1.3
USP28-203ENST00000537490 DMRTB1Q96MA1 342 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 RAB3IPQ96QF0 476 aaPredicted RBP6.94□□□□□ -1.3
USP28-203ENST00000537490 FEVQ99581 238 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 RBM4BQ9BQ04 359 aaKnown RBP6.94□□□□□ -1.3
USP28-203ENST00000537490 DPAGT1Q9H3H5 408 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 HAO2Q9NYQ3 351 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 TAS2R1Q9NYW7 299 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 ZNF391Q9UJN7 358 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 FAM96BQ9Y3D0 163 aa6.94□□□□□ -1.3
USP28-203ENST00000537490 ANXA2P2A6NMY6 339 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 H3BN98 237 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 M0QZ24 198 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 TIMM23O14925 209 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 NPFFO15130 113 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 GPR37O15354 613 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 AKR7A2O43488 359 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 DCTN3O75935 186 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 CST4P01036 141 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 POU1F1P28069 291 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 GINS1Q14691 196 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 FAM98BQ52LJ0 330 aaKnown RBP6.93□□□□□ -1.3
USP28-203ENST00000537490 LRRC10Q5BKY1 277 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 FAM76BQ5HYJ3 339 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 PLBD1Q6P4A8 553 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 GDPGP1Q6ZNW5 385 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 ZNF788Q6ZQV5 615 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 KCTD8Q6ZWB6 473 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 TMEM179BQ7Z7N9 219 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 HIST2H2ABQ8IUE6 130 aaPredicted RBP6.93□□□□□ -1.3
USP28-203ENST00000537490 CMTM4Q8IZR5 234 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 OTOSQ8NHW6 89 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 ANGPTL6Q8NI99 470 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 C8orf46Q8TAG6 207 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 GIPC3Q8TF64 312 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 NPRL2Q8WTW4 380 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 HPSE2Q8WWQ2 592 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 H1FXQ92522 213 aaKnown RBP6.93□□□□□ -1.3
USP28-203ENST00000537490 NSL1Q96IY1 281 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 RNF170Q96K19 258 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 GAFA1Q96PS6 74 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 PKP2Q99959 881 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 RTL8AQ9BWD3 113 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 MMP27Q9H306 513 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 RGCCQ9H4X1 137 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 C16orf95Q9H693 158 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 TCF7L1Q9HCS4 588 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 ZNRD1Q9P1U0 126 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 KLHDC2Q9Y2U9 406 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 CAB39Q9Y376 341 aaPredicted RBP6.93□□□□□ -1.3
USP28-203ENST00000537490 MPC1Q9Y5U8 109 aa6.93□□□□□ -1.3
USP28-203ENST00000537490 PKD1L1Q8TDX9 2849 aa6.92□□□□□ -1.3
USP28-203ENST00000537490 ZNF816-ZNF321PA0A0X1KG74 233 aa6.92□□□□□ -1.3
USP28-203ENST00000537490 TMEM210A6NLX4 147 aa6.92□□□□□ -1.3
USP28-203ENST00000537490 PRR23D1E9PI22 279 aaPredicted RBP6.92□□□□□ -1.3
USP28-203ENST00000537490 RHBDL1O75783 438 aa6.92□□□□□ -1.3
USP28-203ENST00000537490 TSPAN9O75954 239 aa6.92□□□□□ -1.3
USP28-203ENST00000537490 TSPAN15O95858 294 aa6.92□□□□□ -1.3
USP28-203ENST00000537490 CST1P01037 141 aa6.92□□□□□ -1.3
USP28-203ENST00000537490 LYNP07948 512 aa6.92□□□□□ -1.3
USP28-203ENST00000537490 ACAA1P09110 424 aaPredicted RBP6.92□□□□□ -1.3
USP28-203ENST00000537490 FBP1P09467 338 aa6.92□□□□□ -1.3
USP28-203ENST00000537490 PRR23D2P0DMB1 279 aaPredicted RBP6.92□□□□□ -1.3
USP28-203ENST00000537490 RAP2AP10114 183 aa6.92□□□□□ -1.3
USP28-203ENST00000537490 EEF1B2P24534 225 aaKnown RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms