RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 RBMXP38159 391 aaKnown RBP12.65□□□□□ -0.38
CPSF1-208ENST00000532560 GNALP38405 381 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 MDH2P40926 338 aaKnown RBP12.65□□□□□ -0.38
CPSF1-208ENST00000532560 PMELP40967 661 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 ISL1P61371 349 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 ZNF85Q03923 595 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 ZMYND11Q15326 602 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 PLEKHG7Q6ZR37 379 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 KRT74Q7RTS7 529 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 ELMOD2Q8IZ81 293 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 MUC20Q8N307 709 aaPredicted RBP12.65□□□□□ -0.38
CPSF1-208ENST00000532560 SPICQ8N5J4 248 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 YIPF7Q8N8F6 280 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 OR11L1Q8NGX0 322 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 OR8S1Q8NH09 359 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 PPP1R14BQ96C90 147 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 PALMDQ9NP74 551 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 G6PC2Q9NQR9 355 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 GPR84Q9NQS5 396 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 OR52A1Q9UKL2 312 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 EXOGQ9Y2C4 368 aaKnown RBP12.65□□□□□ -0.38
CPSF1-208ENST00000532560 TPRKBQ9Y3C4 175 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 MPC1Q9Y5U8 109 aa12.65□□□□□ -0.38
CPSF1-208ENST00000532560 ZNF816-ZNF321PA0A0X1KG74 233 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 ANXA2P2A6NMY6 339 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 H3BMQ9 156 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 FAM20BO75063 409 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 CRLF1O75462 422 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 CLIC3O95833 236 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 CYB5R3P00387 301 aaPredicted RBP12.64□□□□□ -0.39
CPSF1-208ENST00000532560 MSMBP08118 114 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 MAP2K3P46734 347 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 DVL1P1P54792 670 aaPredicted RBP12.64□□□□□ -0.39
CPSF1-208ENST00000532560 IL5RAQ01344 420 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 MPPED2Q15777 294 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 ZBTB37Q5TC79 503 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 LIPNQ5VXI9 398 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 FAM220AQ7Z4H9 259 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 LRRC28Q86X40 367 aaPredicted RBP12.64□□□□□ -0.39
CPSF1-208ENST00000532560 COMMD2Q86X83 199 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 OR51F2Q8NH61 342 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 OR51E1Q8TCB6 317 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 APH1BQ8WW43 257 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 LGALS12Q96DT0 336 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 ITPKCQ96DU7 683 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 POM121Q96HA1 1249 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 UFSP2Q9NUQ7 469 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 SCN3BQ9NY72 215 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 GTF2A1LQ9UNN4 478 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 NAV3Q8IVL0 2385 aa12.64□□□□□ -0.39
CPSF1-208ENST00000532560 NIPBLQ6KC79 2804 aaeCLIP12.63□□□□□ -0.39
CPSF1-208ENST00000532560 DAPL1A0PJW8 107 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 MTRF1O75570 445 aaKnown RBP12.63□□□□□ -0.39
CPSF1-208ENST00000532560 DHRS3O75911 302 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 RPP14O95059 124 aaKnown RBP12.63□□□□□ -0.39
CPSF1-208ENST00000532560 IRF2P14316 349 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 PRDX4Q13162 271 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 CDONQ4KMG0 1287 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 KCTD20Q7Z5Y7 419 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 WDR86Q86TI4 376 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 GLCCI1Q86VQ1 547 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 CATSPERDQ86XM0 798 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 SPARTQ8N0X7 666 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 KLHL36Q8N4N3 616 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 SVOPQ8N4V2 548 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 ACBD7Q8N6N7 88 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 SEMA6DQ8NFY4 1073 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 RORBQ92753 470 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 MUL1Q969V5 352 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 PPP1R14AQ96A00 147 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 FAM71F1Q96KD3 344 aaPredicted RBP12.63□□□□□ -0.39
CPSF1-208ENST00000532560 ACOXLQ9NUZ1 547 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 MRPS18AQ9NVS2 196 aaKnown RBP12.63□□□□□ -0.39
CPSF1-208ENST00000532560 ETAA1Q9NY74 926 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 LPAR3Q9UBY5 353 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 GNG8Q9UK08 70 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 CDC42EP3Q9UKI2 254 aa12.63□□□□□ -0.39
CPSF1-208ENST00000532560 RPL36Q9Y3U8 105 aaKnown RBP12.63□□□□□ -0.39
CPSF1-208ENST00000532560 TRAV20A0A0B4J274 112 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 DHRS7CA6NNS2 312 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 ZNF850A8MQ14 1090 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 F5H0A9 414 aaPredicted RBP12.62□□□□□ -0.39
CPSF1-208ENST00000532560 SLC1A7O00341 560 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 WBP4O75554 376 aaKnown RBP12.62□□□□□ -0.39
CPSF1-208ENST00000532560 FADS2O95864 444 aaKnown RBP12.62□□□□□ -0.39
CPSF1-208ENST00000532560 IGHA1P01876 353 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 PCMT1P22061 227 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 CCL1P22362 96 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 CPT2P23786 658 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 ACTA2P62736 377 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 ACTG2P63267 376 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 RIPPLY1Q0D2K3 151 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 RAB40BQ12829 278 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 GPR107Q5VW38 600 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 Q6ZSR3 168 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 ZDHHC23Q8IYP9 409 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 OR1M1Q8NGA1 313 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 HPSE2Q8WWQ2 592 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 OR5P3Q8WZ94 311 aa12.62□□□□□ -0.39
CPSF1-208ENST00000532560 TMEM186Q96B77 213 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms