RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TMEM86BQ8N661 226 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 CD177Q8N6Q3 437 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 NECAB1Q8N987 351 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 OR5K2Q8NHB8 316 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 RERGQ96A58 199 aaPredicted RBP2.73□□□□□ -1.97
CD44-235ENST00000532339 NOL4LQ96MY1 436 aaPredicted RBP2.73□□□□□ -1.97
CD44-235ENST00000532339 C18orf15Q96N68 181 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 ZNF670Q9BS34 389 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 TSSK1BQ9BXA7 367 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 CHIAQ9BZP6 476 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 TREM2Q9NZC2 230 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 PDE10AQ9Y233 779 aa2.73□□□□□ -1.97
CD44-235ENST00000532339 ZNF256Q9Y2P7 627 aaPredicted RBP2.73□□□□□ -1.97
CD44-235ENST00000532339 IGKV3D-11A0A0A0MRZ8 115 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 SIGLEC16A6NMB1 481 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 B4DXG7 233 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 PRKYO43930 277 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 TIMM8AO60220 97 aaPredicted RBP2.72□□□□□ -1.97
CD44-235ENST00000532339 SERPINA3P01011 423 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 ZNF708P17019 499 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 IMPDH1P20839 514 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 FASP25445 335 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 LEPP41159 167 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 MAGEA8P43361 318 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 RPL29P47914 159 aaKnown RBP2.72□□□□□ -1.97
CD44-235ENST00000532339 PRLHRP49683 370 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 TMED10P49755 219 aaKnown RBP2.72□□□□□ -1.97
CD44-235ENST00000532339 LHX2P50458 406 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 IDH3GP51553 393 aaPredicted RBP2.72□□□□□ -1.97
CD44-235ENST00000532339 PRKXP51817 358 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 SEC61GP60059 68 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 TPI1P60174 286 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 RPL23AP62750 156 aaKnown RBP2.72□□□□□ -1.97
CD44-235ENST00000532339 SLC35A2P78381 396 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 MRPS11P82912 194 aaKnown RBP2.72□□□□□ -1.97
CD44-235ENST00000532339 Q1RN00 199 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 TIMM50Q3ZCQ8 353 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 KLF17Q5JT82 389 aaPredicted RBP2.72□□□□□ -1.97
CD44-235ENST00000532339 ARFGEF3Q5TH69 2177 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 MARC1Q5VT66 337 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 C2orf66Q6UXQ4 117 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 HSDL2Q6YN16 418 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 ZNF677Q86XU0 584 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 OR2L13Q8N349 312 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 OR2L3Q8NG85 312 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 OR2L8Q8NGY9 312 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 OR8K3Q8NH51 312 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 TUBGCP3Q96CW5 907 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 SLC38A2Q96QD8 506 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 OR2A5Q96R48 311 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 HBEGFQ99075 208 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 SLC35A5Q9BS91 424 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 GPR61Q9BZJ8 451 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 METTL7AQ9H8H3 244 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 UGT1A10Q9HAW8 530 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 IL26Q9NPH9 171 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 ANAPC11Q9NYG5 84 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 DPM3Q9P2X0 92 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 ONECUT1Q9UBC0 465 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 ZMAT5Q9UDW3 170 aaKnown RBP2.72□□□□□ -1.97
CD44-235ENST00000532339 DNAJC12Q9UKB3 198 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 PIGLQ9Y2B2 252 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 DNAH5Q8TE73 4624 aa2.72□□□□□ -1.97
CD44-235ENST00000532339 A8MUA0 341 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 SULT2B1O00204 365 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 FOXE1O00358 373 aaPredicted RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 CALUO43852 315 aaPredicted RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 CXCL13O43927 109 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 MGRN1O60291 552 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 RAMP3O60896 148 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 RDH16O75452 317 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 GCM2O75603 506 aaPredicted RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 UGT2B17O75795 530 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 THY1P04216 161 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 IL1RNP18510 177 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 SDC4P31431 198 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 MAP3K8P41279 467 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 GPR6P46095 362 aaPredicted RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 FNTAP49354 379 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 PPOXP50336 477 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 SLC25A1P53007 311 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 CDH6P55285 790 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 CLDN18P56856 261 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 RPL32P62910 135 aaKnown RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 RELAQ04206 551 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 ASAH1Q13510 395 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 BCL2A1Q16548 175 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 ZNF658BQ4V348 819 aaPredicted RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 LINC00336Q6ZUF6 198 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 KRTAP5-5Q701N2 237 aaPredicted RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 DHDDSQ86SQ9 333 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 SLC22A9Q8IVM8 553 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 SLC35F2Q8IXU6 374 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 GABRG1Q8N1C3 465 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 GPR137CQ8N3F9 429 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 C2orf73Q8N5S3 287 aaPredicted RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 NPWQ8N729 165 aa2.71□□□□□ -1.98
CD44-235ENST00000532339 FAM83FQ8NEG4 500 aaPredicted RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 TSEN15Q8WW01 171 aaKnown RBP2.71□□□□□ -1.98
CD44-235ENST00000532339 MUCL1Q96DR8 90 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms