RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 HAGHLQ6PII5 290 aaPredicted RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 ZNF620Q6ZNG0 422 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 APTXQ7Z2E3 356 aaKnown RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 ERASQ7Z444 233 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 FAM220AQ7Z4H9 259 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 PAQR7Q86WK9 346 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 C17orf64Q86WR6 236 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 ZBTB8OSQ8IWT0 167 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 TCTE3Q8IZS6 198 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 ZNF525Q8N782 197 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 LRRC52Q8N7C0 313 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 RNF148Q8N7C7 305 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 ZNF283Q8N7M2 679 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 RELL2Q8NC24 303 aaPredicted RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 TMEM161BQ8NDZ6 487 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 BEST4Q8NFU0 473 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 OR5T3Q8NGG3 340 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 OR9A4Q8NGU2 314 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 WDR36Q8NI36 951 aaKnown RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 KCNG3Q8TAE7 436 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 NUBPLQ8TB37 319 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 GNPDA2Q8TDQ7 276 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 TBCKQ8TEA7 893 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 S100ZQ8WXG8 99 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 CREB3L1Q96BA8 519 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 TM4SF19Q96DZ7 209 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 MAGEB18Q96M61 343 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 GLT1D1Q96MS3 346 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 TECTBQ96PL2 329 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 NAPGQ99747 312 aaPredicted RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 AGPAT1Q99943 283 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 CMSS1Q9BQ75 279 aaKnown RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 ZNF426Q9BUY5 554 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 ST6GALNAC5Q9BVH7 336 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 SNHG12Q9BXW3 62 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 ULBP1Q9BZM6 244 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 ACTR8Q9H981 624 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 POPDC2Q9HBU9 364 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 PIGVQ9NUD9 493 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 RDH8Q9NYR8 311 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 TAS2R16Q9NYV7 291 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 TECRQ9NZ01 308 aaKnown RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 SPG21Q9NZD8 308 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 CNOT2Q9NZN8 540 aaKnown RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 PHF11Q9UIL8 331 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 SCP2D1Q9UJQ7 156 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 NEU3Q9UQ49 428 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 KPTNQ9Y664 436 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 PEAK1Q9H792 1746 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 CRYBG1Q9Y4K1 1723 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 LRRC37A3O60309 1634 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 IQGAP3Q86VI3 1631 aa2.79□□□□□ -1.96
CD44-217ENST00000525348 PHRF1Q9P1Y6 1649 aaKnown RBP2.79□□□□□ -1.96
CD44-217ENST00000525348 CDC42BPGQ6DT37 1551 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 NEXMIFQ5QGS0 1516 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 ABCC5O15440 1437 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 MTCL1Q9Y4B5 1905 aaKnown RBP2.78□□□□□ -1.96
CD44-217ENST00000525348 SF3B1O75533 1304 aaKnown RBP eCLIP2.78□□□□□ -1.96
CD44-217ENST00000525348 ZSWIM8A7E2V4 1837 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 PPIAL4EA0A075B759 164 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 PPIAL4CA0A0B4J2A2 164 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 TMEM150BA6NC51 233 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 CCDC182A6NF36 153 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 SAGE2PA6NJ88 616 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 A8MWP6 167 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 OR11H12B2RN74 326 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 C9J4A7 227 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 ANKRD63C9JTQ0 380 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 PPIAL4DF5H284 164 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 BHLHE40O14503 412 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 CYB5BO43169 146 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 TGOLN2O43493 480 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 RAD1O60671 282 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 RAD51DO75771 328 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 OR2F2O95006 317 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 SCELO95171 688 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 STBD1O95210 358 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 AP2A1O95782 977 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 GPR75O95800 540 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 FGGP02679 453 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 C1QCP02747 245 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 ARG1P05089 322 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 SNRPCP09234 159 aaKnown RBP2.78□□□□□ -1.96
CD44-217ENST00000525348 ALPIP09923 528 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 PPIAL4FP0DN26 164 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 PNMTP11086 282 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 B4GALT1P15291 398 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 CSNK2A2P19784 350 aaPredicted RBP2.78□□□□□ -1.96
CD44-217ENST00000525348 BCKDHBP21953 392 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 CD82P27701 267 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 GNRHRP30968 328 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 CALCRP30988 508 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 ADRA1AP35348 466 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 CFHR2P36980 270 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 CSNK1A1P48729 337 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 AQP4P55087 323 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 CLDN18P56856 261 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 TAS2R39P59534 338 aa2.78□□□□□ -1.96
CD44-217ENST00000525348 RPS20P60866 119 aaKnown RBP2.78□□□□□ -1.96
CD44-217ENST00000525348 MAGOHP61326 146 aaKnown RBP2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms