RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 IGFBPL1Q8WX77 278 aa13.83□□□□□ -0.19
LSM1-204ENST00000522515 RPL3LQ92901 407 aaKnown RBP13.83□□□□□ -0.19
LSM1-204ENST00000522515 ITPKCQ96DU7 683 aa13.83□□□□□ -0.19
LSM1-204ENST00000522515 CHCHD6Q9BRQ6 235 aa13.83□□□□□ -0.19
LSM1-204ENST00000522515 CACNG6Q9BXT2 260 aa13.83□□□□□ -0.19
LSM1-204ENST00000522515 FGF23Q9GZV9 251 aaPredicted RBP13.83□□□□□ -0.19
LSM1-204ENST00000522515 SLC22A4Q9H015 551 aa13.83□□□□□ -0.19
LSM1-204ENST00000522515 TPK1Q9H3S4 243 aa13.83□□□□□ -0.19
LSM1-204ENST00000522515 ZCCHC4Q9H5U6 513 aa13.83□□□□□ -0.19
LSM1-204ENST00000522515 TAS2R4Q9NYW5 299 aa13.83□□□□□ -0.19
LSM1-204ENST00000522515 DSCAMO60469 2012 aa13.83□□□□□ -0.19
LSM1-204ENST00000522515 NBPF19A0A087WUL8 3843 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 TRAV8-7A0A075B6U6 113 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 IGKV1-9A0A0C4DH69 117 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 F5H5P2 479 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 RAF1P04049 648 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 UCHL1P09936 223 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 CDKN1AP38936 164 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 PPOXP50336 477 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 PLCXD3Q63HM9 321 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 UTS2BQ765I0 119 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 SATL1Q86VE3 508 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 OR5P3Q8WZ94 311 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 THRSPQ92748 146 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 ELMOD3Q96FG2 381 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 VRK1Q99986 396 aaPredicted RBP13.83□□□□□ -0.2
LSM1-204ENST00000522515 EXOSC4Q9NPD3 245 aaKnown RBP13.83□□□□□ -0.2
LSM1-204ENST00000522515 ZDHHC8Q9ULC8 765 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 PMF1-BGLAPU3KQ54 211 aa13.83□□□□□ -0.2
LSM1-204ENST00000522515 ANXA2P2A6NMY6 339 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 ADH4P08319 380 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 BMP4P12644 408 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 IGFBP3P17936 291 aaPredicted RBP13.82□□□□□ -0.2
LSM1-204ENST00000522515 GALP22466 123 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 FGF9P31371 208 aaPredicted RBP13.82□□□□□ -0.2
LSM1-204ENST00000522515 CEACAM21Q3KPI0 293 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 HSD17B12Q53GQ0 312 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 SPRNQ5BIV9 151 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 C22orf42Q6IC83 251 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 ZNF529Q6P280 563 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 OR51A2Q8NGJ7 313 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 OR8S1Q8NH09 359 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 NPRL2Q8WTW4 380 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 CCL19Q99731 98 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 NAA50Q9GZZ1 169 aaKnown RBP13.82□□□□□ -0.2
LSM1-204ENST00000522515 TXNL4BQ9NX01 149 aaKnown RBP13.82□□□□□ -0.2
LSM1-204ENST00000522515 FBXO9Q9UK97 447 aaPredicted RBP13.82□□□□□ -0.2
LSM1-204ENST00000522515 SSR3Q9UNL2 185 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 TACC2O95359 2948 aa13.82□□□□□ -0.2
LSM1-204ENST00000522515 IGHV3-64DA0A0J9YX35 117 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 LOC100506127A0A0U1RQW1 187 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 OVOL3O00110 214 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 SULT1B1O43704 296 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 AIREO43918 545 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 ATF1P18846 271 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 FSTP19883 344 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 CALRP27797 417 aaKnown RBP13.81□□□□□ -0.2
LSM1-204ENST00000522515 THBS2P35442 1172 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 CCL8P80075 99 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 MAB21L1Q13394 359 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 BLMHQ13867 455 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 GPR107Q5VW38 600 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 PAMR1Q6UXH9 720 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 OR1M1Q8NGA1 313 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 TRMT10AQ8TBZ6 339 aaKnown RBP13.81□□□□□ -0.2
LSM1-204ENST00000522515 PHYHIPQ92561 330 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 HIST1H2AAQ96QV6 131 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 DIRC2Q96SL1 478 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 CENPOQ9BU64 300 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 RNF167Q9H6Y7 350 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 NOP16Q9Y3C1 178 aaKnown RBP13.81□□□□□ -0.2
LSM1-204ENST00000522515 AKAP6Q13023 2319 aa13.81□□□□□ -0.2
LSM1-204ENST00000522515 CACNA1DQ01668 2161 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.8□□□□□ -0.2
LSM1-204ENST00000522515 LOC100289279A0A1B0GTE1 492 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 ARL6IP5O75915 188 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 SRMP19623 302 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 RAB3AP20336 220 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 TNFAIP6P98066 277 aaPredicted RBP13.8□□□□□ -0.2
LSM1-204ENST00000522515 CNN3Q15417 329 aaKnown RBP13.8□□□□□ -0.2
LSM1-204ENST00000522515 TIMM50Q3ZCQ8 353 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 SLC16A12Q6ZSM3 486 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 WDR86Q86TI4 376 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 SPERTQ8NA61 448 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 OR5A2Q8NGI9 324 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 RNF170Q96K19 258 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 SORCS2Q96PQ0 1159 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 OR2V2Q96R30 315 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 MICU1Q9BPX6 476 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 CXXC4Q9H2H0 198 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 ABCB9Q9NP78 766 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 CKLFQ9UBR5 152 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 IL19Q9UHD0 177 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 FOXJ3Q9UPW0 622 aa13.8□□□□□ -0.2
LSM1-204ENST00000522515 H7C417 338 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 NCR1O76036 304 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 ALX3O95076 343 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 MAS1P04201 325 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 CD55P08174 381 aa13.79□□□□□ -0.2
LSM1-204ENST00000522515 AZGP1P25311 298 aaKnown RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms