RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ERGP11308 486 aa10.45□□□□□ -0.74
SYNPO-204ENST00000519664 HAAOP46952 286 aa10.45□□□□□ -0.74
SYNPO-204ENST00000519664 NXPH1P58417 271 aa10.45□□□□□ -0.74
SYNPO-204ENST00000519664 OR8G2PQ6IF36 304 aa10.45□□□□□ -0.74
SYNPO-204ENST00000519664 C6orf15Q6UXA7 325 aaPredicted RBP10.45□□□□□ -0.74
SYNPO-204ENST00000519664 LYG2Q86SG7 212 aa10.45□□□□□ -0.74
SYNPO-204ENST00000519664 ABHD5Q8WTS1 349 aa10.45□□□□□ -0.74
SYNPO-204ENST00000519664 SLC25A31Q9H0C2 315 aa10.45□□□□□ -0.74
SYNPO-204ENST00000519664 TIMM10BQ9Y5J6 103 aa10.45□□□□□ -0.74
SYNPO-204ENST00000519664 ST8SIA3O43173 380 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 TIMM8AO60220 97 aaPredicted RBP10.44□□□□□ -0.74
SYNPO-204ENST00000519664 OR2F2O95006 317 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 IL9P15248 144 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 FUT7Q11130 342 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 CLN3Q13286 438 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 OR2F1Q13607 317 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 INPP5JQ15735 1006 aaPredicted RBP10.44□□□□□ -0.74
SYNPO-204ENST00000519664 LPCAT3Q6P1A2 487 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 BAP18Q8IXM2 172 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 PLPP5Q8NEB5 264 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 EMG1Q92979 244 aaKnown RBP10.44□□□□□ -0.74
SYNPO-204ENST00000519664 RBMXL1Q96E39 390 aaKnown RBP10.44□□□□□ -0.74
SYNPO-204ENST00000519664 PLPPR2Q96GM1 343 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 NPAS1Q99742 590 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 PDCD11Q14690 1871 aaKnown RBP10.44□□□□□ -0.74
SYNPO-204ENST00000519664 PTP4A3O75365 173 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 CCL4P13236 92 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 CCL2P13500 99 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 IRF2P14316 349 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 GLRA1P23415 457 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 EDDM3BP56851 147 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 PIGPP57054 158 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 RPL19P84098 196 aaKnown RBP10.44□□□□□ -0.74
SYNPO-204ENST00000519664 KISS1Q15726 138 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 RNLSQ5VYX0 342 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 C6orf201Q7Z4U5 140 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 SKA3Q8IX90 412 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 RTN4IP1Q8WWV3 396 aaPredicted RBP10.44□□□□□ -0.74
SYNPO-204ENST00000519664 MCHR2Q969V1 340 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 NEUROG3Q9Y4Z2 214 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 ABCA1O95477 2261 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 PPP1R2P9O14990 202 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 LRP3O75074 770 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 FCARP24071 287 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 OR3A4PP47883 348 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 UBE2KP61086 200 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 ANKRD37Q7Z713 158 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 OR52H1Q8NGJ2 320 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 ARRDC1-AS1Q9H2J1 176 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 HDGFL3Q9Y3E1 203 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 WNK2Q9Y3S1 2297 aa10.44□□□□□ -0.74
SYNPO-204ENST00000519664 MBTPS2O43462 519 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 NGFRP08138 427 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 SNRPEP62304 92 aaKnown RBP10.43□□□□□ -0.74
SYNPO-204ENST00000519664 SKP2Q13309 424 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 TMEM268Q5VZI3 342 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 SLC16A13Q7RTY0 426 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 PNPLA5Q7Z6Z6 429 aaPredicted RBP10.43□□□□□ -0.74
SYNPO-204ENST00000519664 NOXO1Q8NFA2 376 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 AMELYQ99218 206 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 CFHR5Q9BXR6 569 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 LOXL2Q9Y4K0 774 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 COL6A6A6NMZ7 2263 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 PKDREJQ9NTG1 2253 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 A0A1W2PR80 420 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 SHISA3A0PJX4 238 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 ZFP92A6NM28 416 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 ADAP1O75689 374 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 WNT11O96014 354 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 MBP02144 154 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 CD63P08962 238 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 RPL12P30050 165 aaKnown RBP10.43□□□□□ -0.74
SYNPO-204ENST00000519664 NDUFA6P56556 154 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 RPS4XP62701 263 aaKnown RBP10.43□□□□□ -0.74
SYNPO-204ENST00000519664 KIAA0141Q14154 515 aaPredicted RBP10.43□□□□□ -0.74
SYNPO-204ENST00000519664 TUSC1Q2TAM9 212 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 GALNT16Q8N428 558 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 CHST6Q9GZX3 395 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 MED13LQ71F56 2210 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 ANKRD34CP0C6C1 535 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 PTAFRP25105 342 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 NKX2-1P43699 371 aaPredicted RBP10.43□□□□□ -0.74
SYNPO-204ENST00000519664 ZNF133P52736 654 aaPredicted RBP10.43□□□□□ -0.74
SYNPO-204ENST00000519664 ELFN2Q5R3F8 820 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 UQCC3Q6UW78 93 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 Q7L0L9 218 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 KMT5CQ86Y97 462 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 FAAP24Q9BTP7 215 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 EXOSC3Q9NQT5 275 aaKnown RBP10.43□□□□□ -0.74
SYNPO-204ENST00000519664 INTS1Q8N201 2190 aaKnown RBP10.43□□□□□ -0.74
SYNPO-204ENST00000519664 CBR3O75828 277 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 ERVK-16P61578 105 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 HLXQ14774 488 aaPredicted RBP10.43□□□□□ -0.74
SYNPO-204ENST00000519664 ZNF468Q5VIY5 522 aaPredicted RBP10.43□□□□□ -0.74
SYNPO-204ENST00000519664 CST9LP1Q5W188 147 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 ZNF774Q6NX45 483 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 PLXDC2Q6UX71 529 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 SEZ6L2Q6UXD5 910 aa10.43□□□□□ -0.74
SYNPO-204ENST00000519664 TMEM182Q6ZP80 229 aaPredicted RBP10.43□□□□□ -0.74
SYNPO-204ENST00000519664 C9orf40Q8IXQ3 194 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms