RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 TEAD3Q99594 435 aa11.33□□□□□ -0.6
TCOF1-215ENST00000515516 CCL13Q99616 98 aa11.33□□□□□ -0.6
TCOF1-215ENST00000515516 PKP2Q99959 881 aa11.33□□□□□ -0.6
TCOF1-215ENST00000515516 ZNF747Q9BV97 191 aa11.33□□□□□ -0.6
TCOF1-215ENST00000515516 CNTD2Q9H8S5 307 aa11.33□□□□□ -0.6
TCOF1-215ENST00000515516 SMURF1Q9HCE7 757 aa11.33□□□□□ -0.6
TCOF1-215ENST00000515516 LRP12Q9Y561 859 aa11.33□□□□□ -0.6
TCOF1-215ENST00000515516 PCDHGB1Q9Y5G3 927 aa11.33□□□□□ -0.6
TCOF1-215ENST00000515516 SOX21Q9Y651 276 aaPredicted RBP11.33□□□□□ -0.6
TCOF1-215ENST00000515516 WNK2Q9Y3S1 2297 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 MDFIC2A0A1B0GVS7 189 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 TMEM269A0A1B0GVZ9 245 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 NKX6-3A6NJ46 265 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 GPR37O15354 613 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 HOXA3O43365 443 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-215ENST00000515516 ZNF254O75437 659 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 MRPL3P09001 348 aaKnown RBP11.32□□□□□ -0.6
TCOF1-215ENST00000515516 SLC2A5P22732 501 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 DAPP51397 102 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 HCCSP53701 268 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 GMFBP60983 142 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 ACTR3P61158 418 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 ARF6P62330 175 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 PTGES3Q15185 160 aaKnown RBP11.32□□□□□ -0.6
TCOF1-215ENST00000515516 ZNF829Q3KNS6 432 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-215ENST00000515516 WDR38Q5JTN6 314 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 CMTM4Q8IZR5 234 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 SCCPDHQ8NBX0 429 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 OR10Z1Q8NGY1 313 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 OR5P3Q8WZ94 311 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 RPL3LQ92901 407 aaKnown RBP11.32□□□□□ -0.6
TCOF1-215ENST00000515516 LHX4Q969G2 390 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 FAM71F1Q96KD3 344 aaPredicted RBP11.32□□□□□ -0.6
TCOF1-215ENST00000515516 TLNRD1Q9H1K6 362 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 PPP1R3EQ9H7J1 279 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 TNFRSF19Q9NS68 423 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 KRT84Q9NSB2 600 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 HAO2Q9NYQ3 351 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 IKZF2Q9UKS7 526 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 KLHDC2Q9Y2U9 406 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 ARHGAP32A7KAX9 2087 aa11.32□□□□□ -0.6
TCOF1-215ENST00000515516 CENPVL3A0A0U1RRI6 287 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 ZNF816-ZNF321PA0A0X1KG74 233 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 POM121CA8CG34 1229 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 SRRM5B3KS81 715 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 G3V2T6 193 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 PSMD9O00233 223 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 SPRY1O43609 319 aaPredicted RBP11.31□□□□□ -0.6
TCOF1-215ENST00000515516 ATP5HO75947 161 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 ATP6V1B1P15313 513 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 ACKR3P25106 362 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 RIDAP52758 137 aaKnown RBP11.31□□□□□ -0.6
TCOF1-215ENST00000515516 IKZF1Q13422 519 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 RUSC1-AS1Q66K80 236 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 FAHD1Q6P587 224 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 ZNF679Q8IYX0 411 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 UTP4Q969X6 686 aaKnown RBP11.31□□□□□ -0.6
TCOF1-215ENST00000515516 MED30Q96HR3 178 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 LYZL4Q96KX0 146 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 TBX15Q96SF7 602 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 CNN2Q99439 309 aaKnown RBP11.31□□□□□ -0.6
TCOF1-215ENST00000515516 CADM1Q9BY67 442 aaKnown RBP11.31□□□□□ -0.6
TCOF1-215ENST00000515516 PBOV1Q9GZY1 135 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 UNKLQ9H9P5 680 aaKnown RBP11.31□□□□□ -0.6
TCOF1-215ENST00000515516 FAM53CQ9NYF3 392 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 ONECUT1Q9UBC0 465 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 ENOPH1Q9UHY7 261 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 RPUSD1Q9UJJ7 312 aaKnown RBP11.31□□□□□ -0.6
TCOF1-215ENST00000515516 KPTNQ9Y664 436 aa11.31□□□□□ -0.6
TCOF1-215ENST00000515516 IGHV1-69DA0A0B4J2H0 117 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 A0A0U1RQV5 110 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 IGHV1-69P01742 117 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 MMP9P14780 707 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 FASP25445 335 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 DCTDP32321 178 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 GPM6AP51674 278 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 GNG3P63215 75 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 RIPPLY1Q0D2K3 151 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 BNIP1Q12981 228 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 ATP6AP1Q15904 470 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 CDONQ4KMG0 1287 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 ATPAF1Q5TC12 328 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-215ENST00000515516 Q6YL49 198 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 MEPCEQ7L2J0 689 aaKnown RBP11.3□□□□□ -0.6
TCOF1-215ENST00000515516 ZDHHC13Q8IUH4 622 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 TMEM86BQ8N661 226 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 FAM216BQ8N7L0 139 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 OR5T2Q8NGG2 359 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 ZNF671Q8TAW3 534 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 TBC1D15Q8TC07 691 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 H1FXQ92522 213 aaKnown RBP11.3□□□□□ -0.6
TCOF1-215ENST00000515516 TMIGD2Q96BF3 282 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 DMRTB1Q96MA1 342 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 RAB3IPQ96QF0 476 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-215ENST00000515516 MNTQ99583 582 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 SIRPDQ9H106 197 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 DNTTIP1Q9H147 329 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 PRDM13Q9H4Q3 707 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 SNTG1Q9NSN8 517 aa11.3□□□□□ -0.6
TCOF1-215ENST00000515516 ACOXLQ9NUZ1 547 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms