RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 CEP250Q9BV73 2442 aa10.9□□□□□ -0.66
HMGN1-220ENST00000492280 PCNX2A6NKB5 2137 aa10.9□□□□□ -0.66
HMGN1-220ENST00000492280 FAM230AA0A1W2PPH8 454 aa10.9□□□□□ -0.66
HMGN1-220ENST00000492280 FAM221AA4D161 298 aa10.9□□□□□ -0.66
HMGN1-220ENST00000492280 RFPL4AA6NLU0 287 aa10.9□□□□□ -0.66
HMGN1-220ENST00000492280 RFPL4AL1F8VTS6 287 aa10.9□□□□□ -0.66
HMGN1-220ENST00000492280 CLDN15P56746 228 aa10.9□□□□□ -0.66
HMGN1-220ENST00000492280 GJC3Q8NFK1 279 aa10.9□□□□□ -0.66
HMGN1-220ENST00000492280 CT55Q8WUE5 264 aa10.9□□□□□ -0.66
HMGN1-220ENST00000492280 RBPMSQ93062 196 aaKnown RBP10.9□□□□□ -0.66
HMGN1-220ENST00000492280 SLCO5A1Q9H2Y9 848 aa10.9□□□□□ -0.66
HMGN1-220ENST00000492280 TCFL5Q9UL49 500 aa10.9□□□□□ -0.66
HMGN1-220ENST00000492280 hCG_1807616A0A1W2PRN6 198 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 C5orf51A6NDU8 294 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 LRRC3CA6NJW4 275 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 CER1O95813 267 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 HPNP05981 417 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 MPGP29372 298 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 B3GALT5-AS1P59052 145 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 GRB2P62993 217 aaKnown RBP10.89□□□□□ -0.67
HMGN1-220ENST00000492280 MEF2DQ14814 521 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 UNQ6126/PRO20091Q6UXV3 157 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 SLC25A42Q86VD7 318 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 ARRDC1-AS1Q9H2J1 176 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 SH2D2AQ9NP31 389 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 MBD2Q9UBB5 411 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 FOXD3Q9UJU5 478 aaPredicted RBP10.89□□□□□ -0.67
HMGN1-220ENST00000492280 A0A0A6YYH2 397 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 A6NJ64 397 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 HMSDA8MTL9 139 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 EFSO43281 561 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 P04436 131 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 AMY2BP19961 511 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 DLSTP36957 453 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 PTGFRP43088 359 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 ARHGDIBP52566 201 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 GGNQ86UU5 652 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 KCNG3Q8TAE7 436 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 TMEM54Q969K7 222 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 TMEM230Q96A57 120 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 VRK1Q99986 396 aaPredicted RBP10.89□□□□□ -0.67
HMGN1-220ENST00000492280 REG4Q9BYZ8 158 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 ALX4Q9H161 411 aaPredicted RBP10.89□□□□□ -0.67
HMGN1-220ENST00000492280 C5orf66Q9H5L9 145 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 FLVCR1Q9Y5Y0 555 aa10.89□□□□□ -0.67
HMGN1-220ENST00000492280 RNF222A6NCQ9 220 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 C3orf80F5H4A9 247 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 MFNGO00587 321 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 NUPL2O15504 423 aaKnown RBP10.88□□□□□ -0.67
HMGN1-220ENST00000492280 DHRS3O75911 302 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 MELTFP08582 738 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 CCL2P13500 99 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 ZNF32P17041 273 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 GDF1P27539 372 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 SERPINF1P36955 418 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 NAXDQ8IW45 347 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 FOXRED2Q8IWF2 684 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 OR10D3Q8NH80 312 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 M1APQ8TC57 530 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 ZNF471Q9BX82 626 aaPredicted RBP10.88□□□□□ -0.67
HMGN1-220ENST00000492280 OR10A2Q9H208 303 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 FOXJ2Q9P0K8 574 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 GPR160Q9UJ42 338 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 MCTS1Q9ULC4 181 aaKnown RBP10.88□□□□□ -0.67
HMGN1-220ENST00000492280 KCNMB2Q9Y691 235 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 SMG1Q96Q15 3661 aaKnown RBP10.88□□□□□ -0.67
HMGN1-220ENST00000492280 MSTNO14793 375 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 CBR3O75828 277 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 KNG1P01042 644 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 LCATP04180 440 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 GLI4P10075 376 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 CCL1P22362 96 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 GLRA1P23415 457 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 RRADP55042 308 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 SNU13P55769 128 aaKnown RBP10.88□□□□□ -0.67
HMGN1-220ENST00000492280 GMFBP60983 142 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 RAC1P63000 192 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 CSNK2A1P68400 391 aaPredicted RBP10.88□□□□□ -0.67
HMGN1-220ENST00000492280 TAF9Q16594 264 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 PGAP1Q75T13 922 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 HDDC2Q7Z4H3 204 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 CSNK2A3Q8NEV1 391 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 OR13G1Q8NGZ3 307 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 SGK3Q96BR1 496 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 PIGQQ9BRB3 760 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 P4HTMQ9NXG6 502 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 EHFQ9NZC4 300 aa10.88□□□□□ -0.67
HMGN1-220ENST00000492280 IGKV1-27A0A075B6S5 117 aa10.87□□□□□ -0.67
HMGN1-220ENST00000492280 A0A1W2PNU3 283 aaPredicted RBP10.87□□□□□ -0.67
HMGN1-220ENST00000492280 OR6C65A6NJZ3 312 aa10.87□□□□□ -0.67
HMGN1-220ENST00000492280 SGCEO43556 437 aa10.87□□□□□ -0.67
HMGN1-220ENST00000492280 FOXG1P55316 489 aaPredicted RBP10.87□□□□□ -0.67
HMGN1-220ENST00000492280 CARD18P57730 90 aa10.87□□□□□ -0.67
HMGN1-220ENST00000492280 KCNMB1Q16558 191 aa10.87□□□□□ -0.67
HMGN1-220ENST00000492280 C3AR1Q16581 482 aa10.87□□□□□ -0.67
HMGN1-220ENST00000492280 CEACAM16Q2WEN9 425 aa10.87□□□□□ -0.67
HMGN1-220ENST00000492280 ACER2Q5QJU3 275 aa10.87□□□□□ -0.67
HMGN1-220ENST00000492280 C10orf128Q5T292 105 aa10.87□□□□□ -0.67
HMGN1-220ENST00000492280 SIGIRRQ6IA17 410 aa10.87□□□□□ -0.67
HMGN1-220ENST00000492280 ELP2Q6IA86 826 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms