RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ZNF775Q96BV0 537 aaPredicted RBP15.77■□□□□ 0.12
VIM-206ENST00000487938 PIK3IP1Q96FE7 263 aa15.77■□□□□ 0.12
VIM-206ENST00000487938 DUSP23Q9BVJ7 150 aa15.77■□□□□ 0.12
VIM-206ENST00000487938 RBM24Q9BX46 236 aaKnown RBP15.77■□□□□ 0.12
VIM-206ENST00000487938 CACNA1EQ15878 2313 aa15.77■□□□□ 0.11
VIM-206ENST00000487938 ATP6V1G2-DDX39BF2Z307 99 aa15.77■□□□□ 0.11
VIM-206ENST00000487938 PLATP00750 562 aa15.77■□□□□ 0.11
VIM-206ENST00000487938 DBHP09172 617 aa15.77■□□□□ 0.11
VIM-206ENST00000487938 FCGR2AP12318 317 aa15.77■□□□□ 0.11
VIM-206ENST00000487938 ADH6P28332 368 aa15.77■□□□□ 0.11
VIM-206ENST00000487938 ECH1Q13011 328 aa15.77■□□□□ 0.11
VIM-206ENST00000487938 PCOLCEQ15113 449 aa15.77■□□□□ 0.11
VIM-206ENST00000487938 AADACL3Q5VUY0 350 aa15.77■□□□□ 0.11
VIM-206ENST00000487938 PIGTQ969N2 578 aa15.77■□□□□ 0.11
VIM-206ENST00000487938 MARC2Q969Z3 335 aa15.77■□□□□ 0.11
VIM-206ENST00000487938 PRELID1Q9Y255 219 aa15.77■□□□□ 0.11
VIM-206ENST00000487938 PI4KAP42356 2102 aa15.76■□□□□ 0.11
VIM-206ENST00000487938 MASP2O00187 686 aa15.76■□□□□ 0.11
VIM-206ENST00000487938 MSR1P21757 451 aa15.76■□□□□ 0.11
VIM-206ENST00000487938 ENDOGQ14249 297 aaKnown RBP15.76■□□□□ 0.11
VIM-206ENST00000487938 RSPO1Q2MKA7 263 aaPredicted RBP15.76■□□□□ 0.11
VIM-206ENST00000487938 ACTBL2Q562R1 376 aa15.76■□□□□ 0.11
VIM-206ENST00000487938 PAQR8Q8TEZ7 354 aa15.76■□□□□ 0.11
VIM-206ENST00000487938 CDC6Q99741 560 aa15.76■□□□□ 0.11
VIM-206ENST00000487938 METTL8Q9H825 291 aaKnown RBP15.76■□□□□ 0.11
VIM-206ENST00000487938 EHFQ9NZC4 300 aa15.76■□□□□ 0.11
VIM-206ENST00000487938 FRYLO94915 3013 aa15.76■□□□□ 0.11
VIM-206ENST00000487938 LOC102725191A0A1B0GVB3 256 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 DNASE2O00115 360 aaPredicted RBP15.75■□□□□ 0.11
VIM-206ENST00000487938 CCL3P10147 92 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 LSM6P62312 80 aaKnown RBP15.75■□□□□ 0.11
VIM-206ENST00000487938 H3F3AP84243 136 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 ZNF239Q16600 458 aaKnown RBP15.75■□□□□ 0.11
VIM-206ENST00000487938 RAET1LQ5VY80 246 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 FAM89BQ8N5H3 189 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 GJC3Q8NFK1 279 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 SAP25Q8TEE9 199 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 OR10C1Q96KK4 312 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 PECRQ9BY49 303 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 NELFAQ9H3P2 528 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 OR5AC2Q9NZP5 309 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 PIGLQ9Y2B2 252 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 SDK2Q58EX2 2172 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 TEX13DA0A0J9YY54 714 aaPredicted RBP15.75■□□□□ 0.11
VIM-206ENST00000487938 MSGN1A6NI15 193 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 ONECUT2O95948 504 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 PRF1P14222 555 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 FPR2P25090 351 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 CYCSP99999 105 aaKnown RBP15.75■□□□□ 0.11
VIM-206ENST00000487938 GTPBP8Q8N3Z3 284 aaPredicted RBP15.75■□□□□ 0.11
VIM-206ENST00000487938 ZNF837Q96EG3 531 aaPredicted RBP15.75■□□□□ 0.11
VIM-206ENST00000487938 SLC26A1Q9H2B4 701 aa15.75■□□□□ 0.11
VIM-206ENST00000487938 CNTRLQ7Z7A1 2325 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 DMDP11532 3685 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 FAM74A7A6NL05 159 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 TOR1AO14656 332 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 HPNP05981 417 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 FAM74A3Q4VXF1 159 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 GALNTL5Q7Z4T8 443 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 CYTL1Q9NRR1 136 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 GSKIPQ9P0R6 139 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 IGKV1D-8A0A087WSZ0 117 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 CEACAM18A8MTB9 384 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 NPIPA2E9PIF3 369 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 F8VVB4 439 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 F8VWA3 439 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 NPIPA3F8WFD2 350 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 KNG1P01042 644 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 TPT1P13693 172 aaKnown RBP15.74■□□□□ 0.11
VIM-206ENST00000487938 CTSSP25774 331 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 HLA-BQ31612 363 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 LYSMD4Q5XG99 296 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 PEG10Q86TG7 708 aaKnown RBP15.74■□□□□ 0.11
VIM-206ENST00000487938 TMEM200AQ86VY9 491 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 LHFPL1Q86WI0 220 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 TMED6Q8WW62 240 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 NABP1Q96AH0 204 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 S100A13Q99584 98 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 PIGMQ9H3S5 423 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 RAB18Q9NP72 206 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 ZNF701Q9NV72 531 aaPredicted RBP15.74■□□□□ 0.11
VIM-206ENST00000487938 OSGIN2Q9Y236 505 aa15.74■□□□□ 0.11
VIM-206ENST00000487938 TRBV6-7A0A0A0MS04 114 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 FOXI3A8MTJ6 420 aaPredicted RBP15.73■□□□□ 0.11
VIM-206ENST00000487938 DHRS3O75911 302 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 IGLV3-1P01715 115 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 CD63P08962 238 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 HOXB5P09067 269 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 NAT2P11245 290 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 GABRR1P24046 479 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 CBX5P45973 191 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 PRSS12P56730 875 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 AIMP2Q13155 320 aaKnown RBP15.73■□□□□ 0.11
VIM-206ENST00000487938 DRAM2Q6UX65 266 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 C6orf201Q7Z4U5 140 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 BAP18Q8IXM2 172 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 WNT2BQ93097 391 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 TMEM54Q969K7 222 aa15.73■□□□□ 0.11
VIM-206ENST00000487938 PTRH2Q9Y3E5 179 aaKnown RBP15.73■□□□□ 0.11
VIM-206ENST00000487938 V9GYS6 101 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms