RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 OR5K1Q8NHB7 308 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 FAM81AQ8TBF8 368 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 TAF15Q92804 592 aaKnown RBP eCLIP13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 RPL3LQ92901 407 aaKnown RBP13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 ZDHHC16Q969W1 377 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 UTP4Q969X6 686 aaKnown RBP13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 CCL13Q99616 98 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 NIPAL2Q9H841 368 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 MPC1Q9Y5U8 109 aa13.02□□□□□ -0.33
CCDC88B-205ENST00000472524 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 P2RY10O00398 339 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 PRKYO43930 277 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 MITFO75030 526 aaPredicted RBP13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 LIPFP07098 398 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 MMP9P14780 707 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 PTGES3Q15185 160 aaKnown RBP13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 METTL11BQ5VVY1 283 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 KCTD18Q6PI47 426 aaPredicted RBP13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 COMMD2Q86X83 199 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 GALNT4Q8N4A0 578 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 WDFY2Q96P53 400 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 TBX15Q96SF7 602 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 TEAD3Q99594 435 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 PKP2Q99959 881 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 YIPF3Q9GZM5 350 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 TLNRD1Q9H1K6 362 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 ZNF696Q9H7X3 374 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 TNFRSF19Q9NS68 423 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 KRT84Q9NSB2 600 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 KAAG1Q9UBP8 84 aa13.01□□□□□ -0.33
CCDC88B-205ENST00000472524 TMEM210A6NLX4 147 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 PRR32B1ATL7 298 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 SRRM5B3KS81 715 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 HOXA3O43365 443 aaPredicted RBP13□□□□□ -0.33
CCDC88B-205ENST00000472524 CST4P01036 141 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 MUC1P15941 1255 aaPredicted RBP13□□□□□ -0.33
CCDC88B-205ENST00000472524 ARF6P62330 175 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 BNIP1Q12981 228 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 SLC36A1Q7Z2H8 476 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 BCDIN3DQ7Z5W3 292 aaKnown RBP13□□□□□ -0.33
CCDC88B-205ENST00000472524 ZDHHC23Q8IYP9 409 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 FAM216BQ8N7L0 139 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 OR5T2Q8NGG2 359 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 HPSE2Q8WWQ2 592 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 OR5P3Q8WZ94 311 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 RNF170Q96K19 258 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 MROQ9BYG7 248 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 PRRG3Q9BZD7 231 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 FGF23Q9GZV9 251 aaPredicted RBP13□□□□□ -0.33
CCDC88B-205ENST00000472524 ABCB9Q9NP78 766 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 SNTG1Q9NSN8 517 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 FAM206AQ9NX38 181 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 DNAJB11Q9UBS4 358 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 ZNF391Q9UJN7 358 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 IKZF2Q9UKS7 526 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 COPS3Q9UNS2 423 aa13□□□□□ -0.33
CCDC88B-205ENST00000472524 CENPVL3A0A0U1RRI6 287 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 ZNF816-ZNF321PA0A0X1KG74 233 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 TMEM269A0A1B0GVZ9 245 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 G3V2T6 193 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 CLDN34H7C241 214 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 AKR7A2O43488 359 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 ECDO95905 644 aaPredicted RBP12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 MAP2K3P46734 347 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 GPM6AP51674 278 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 ESRRGP62508 458 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 IKZF1Q13422 519 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 ATP6AP1Q15904 470 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 CEP78Q5JTW2 689 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 TCEANCQ8N8B7 351 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 SCCPDHQ8NBX0 429 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 LHX4Q969G2 390 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 FAM71F1Q96KD3 344 aaPredicted RBP12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 HIST1H2AAQ96QV6 131 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 OR8B4Q96RC9 309 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 CNN2Q99439 309 aaKnown RBP12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 PBOV1Q9GZY1 135 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 SIRPDQ9H106 197 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 WDR13Q9H1Z4 485 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 UNKLQ9H9P5 680 aaKnown RBP12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 ONECUT1Q9UBC0 465 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 RPUSD1Q9UJJ7 312 aaKnown RBP12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 TMEM14AQ9Y6G1 99 aa12.99□□□□□ -0.33
CCDC88B-205ENST00000472524 A0A0U1RQV5 110 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 TFF1P04155 84 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 SELLP14151 372 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 EPHA2P29317 976 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 RASSF2P50749 326 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 RIDAP52758 137 aaKnown RBP12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 BPIFB3P59826 476 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 DMRTC1Q5HYR2 192 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 C1orf146Q5VVC0 180 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 STUMQ69YW2 141 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 DEGS2Q6QHC5 323 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 AMIGO2Q86SJ2 522 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 PDZD9Q8IXQ8 264 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 ZNF679Q8IYX0 411 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 OR10Z1Q8NGY1 313 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 OR51E1Q8TCB6 317 aa12.98□□□□□ -0.33
CCDC88B-205ENST00000472524 GATAD2BQ8WXI9 593 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms