RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 ZMAT1Q5H9K5 638 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 ARMCX4Q5H9R4 360 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 ZBTB37Q5TC79 503 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 PRAMEF6Q5VXH4 476 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 KRTAP1-3Q8IUG1 177 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 PHC2Q8IXK0 858 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 TSEN15Q8WW01 171 aaKnown RBP12.53□□□□□ -0.4
COL9A3-209ENST00000469852 UFD1Q92890 307 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 MEGF10Q96KG7 1140 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 OR2V2Q96R30 315 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 RAB1BQ9H0U4 201 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 PLEKHA1Q9HB21 404 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 ZNF275Q9NSD4 429 aaPredicted RBP12.53□□□□□ -0.4
COL9A3-209ENST00000469852 NKIRAS2Q9NYR9 191 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 TREM2Q9NZC2 230 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 FBXO9Q9UK97 447 aaPredicted RBP12.53□□□□□ -0.4
COL9A3-209ENST00000469852 CACNG2Q9Y698 323 aa12.53□□□□□ -0.4
COL9A3-209ENST00000469852 A0A087WXM4 84 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 ANKRD61A6NGH8 418 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 F12P00748 615 aaPredicted RBP12.52□□□□□ -0.41
COL9A3-209ENST00000469852 PSMB9P28065 219 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 THBS2P35442 1172 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 GNALP38405 381 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 EFNA4P52798 201 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 UBE2V2Q15819 145 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 PCGF3Q3KNV8 242 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 FAM209AQ5JX71 171 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 CLVS2Q5SYC1 327 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 MOB3CQ70IA8 216 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 ZDHHC23Q8IYP9 409 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 CCDC54Q8NEL0 328 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 GPR148Q8TDV2 347 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 OR5P3Q8WZ94 311 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 YIPF5Q969M3 257 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 TRMT61AQ96FX7 289 aaKnown RBP12.52□□□□□ -0.41
COL9A3-209ENST00000469852 OR14A2Q96R54 314 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 DIRC2Q96SL1 478 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 TMED9Q9BVK6 235 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 CHST5Q9GZS9 411 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 SAP30LQ9HAJ7 183 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 DCAF16Q9NXF7 216 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 EDARQ9UNE0 448 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 DHDHQ9UQ10 334 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 SF3B6Q9Y3B4 125 aaKnown RBP12.52□□□□□ -0.41
COL9A3-209ENST00000469852 MPC1Q9Y5U8 109 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 C2CD3Q4AC94 2353 aa12.52□□□□□ -0.41
COL9A3-209ENST00000469852 MAP1AP78559 2803 aaPredicted RBP12.52□□□□□ -0.41
COL9A3-209ENST00000469852 IGKV1-9A0A0C4DH69 117 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 A0A1W2PPK0 400 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 TPD52L2O43399 206 aaKnown RBP12.51□□□□□ -0.41
COL9A3-209ENST00000469852 SSX4O60224 188 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 CDC14BO60729 498 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 NRASP01111 189 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 OCM2P0CE71 109 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 ZNF12P17014 697 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 ZNF20P17024 532 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 COL8A2P25067 703 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 PMELP40967 661 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 CD200P41217 278 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 HOXA4Q00056 320 aaPredicted RBP12.51□□□□□ -0.41
COL9A3-209ENST00000469852 TESK1Q15569 626 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 MPPED2Q15777 294 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 YIF1BQ5BJH7 314 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 PLCXD3Q63HM9 321 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 RNF144BQ7Z419 303 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 FTMTQ8N4E7 242 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 ZNF525Q8N782 197 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 NPRL2Q8WTW4 380 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 NEU4Q8WWR8 484 aaPredicted RBP12.51□□□□□ -0.41
COL9A3-209ENST00000469852 TMEM203Q969S6 136 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 MUL1Q969V5 352 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 SLC22A4Q9H015 551 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 CXXC4Q9H2H0 198 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 DECR2Q9NUI1 292 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 IL19Q9UHD0 177 aa12.51□□□□□ -0.41
COL9A3-209ENST00000469852 DYSFO75923 2080 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 PRRC2AP48634 2157 aaKnown RBP12.5□□□□□ -0.41
COL9A3-209ENST00000469852 PIN1P1O15428 100 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 RPSAP08865 295 aaKnown RBP12.5□□□□□ -0.41
COL9A3-209ENST00000469852 DAOP14920 347 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 GPM6AP51674 278 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 GPR50Q13585 617 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 CEACAM21Q3KPI0 293 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 Q499Y3 187 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 FAM27D1Q5T7N8 215 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 SYT6Q5T7P8 510 aaPredicted RBP12.5□□□□□ -0.41
COL9A3-209ENST00000469852 LRRC75A-AS1Q8N1F1 130 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 PARP16Q8N5Y8 322 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 OR13C9Q8NGT0 318 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 OR8S1Q8NH09 359 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 ZNF420Q8TAQ5 688 aaPredicted RBP12.5□□□□□ -0.41
COL9A3-209ENST00000469852 FCGR1BQ92637 280 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 ITFG2Q969R8 447 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 TMEM106AQ96A25 262 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 UFSP2Q9NUQ7 469 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 TAS2R4Q9NYW5 299 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 ITGB1BP2Q9UKP3 347 aa12.5□□□□□ -0.41
COL9A3-209ENST00000469852 IGKV1-27A0A075B6S5 117 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 TRBV5-7A0A0A0MS05 114 aa12.49□□□□□ -0.41
COL9A3-209ENST00000469852 IGHV1-69-2A0A0G2JMI3 117 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms