RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 DECR2Q9NUI1 292 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 ACOXLQ9NUZ1 547 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 CNOT2Q9NZN8 540 aaKnown RBP10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 OR52A1Q9UKL2 312 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 RAB26Q9ULW5 256 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 GTF2A1LQ9UNN4 478 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 DIMT1Q9UNQ2 313 aaKnown RBP10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 WNK2Q9Y3S1 2297 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 IGHV1-69-2A0A0G2JMI3 117 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 EFCAB10A6NFE3 127 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 SLC1A7O00341 560 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 MLNRO43193 412 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 TPD52L2O43399 206 aaKnown RBP10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 XPNPEP2O43895 674 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 MSMBP08118 114 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 LIMS3P0CW19 117 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 LIMS4P0CW20 117 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 TNFSF4P23510 183 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 GSK3AP49840 483 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 OR12D2P58182 307 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 LMO4P61968 165 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 CSNK2BP67870 215 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 TNFAIP6P98066 277 aaPredicted RBP10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 SNCBQ16143 134 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 WDR38Q5JTN6 314 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 C6orf141Q5SZD1 244 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 AHSA2Q719I0 299 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 CATSPERDQ86XM0 798 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 ELMOD2Q8IZ81 293 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 SYS1Q8N2H4 156 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 CSNK2A3Q8NEV1 391 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 BPIFB6Q8NFQ5 453 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 OR10AD1Q8NGE0 317 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 GGHQ92820 318 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 ITFG2Q969R8 447 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 PPP1R14AQ96A00 147 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 RNF166Q96A37 237 aaPredicted RBP10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 TMEM80Q96HE8 168 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 ZNF184Q99676 751 aaPredicted RBP10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 SLC6A7Q99884 636 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 EGLN1Q9GZT9 426 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 SLC22A4Q9H015 551 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 SAP30LQ9HAJ7 183 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 TMEM100Q9NV29 134 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 MRPL15Q9P015 296 aaKnown RBP10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 PSORS1C1Q9UIG5 152 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 SLC22A13Q9Y226 551 aa10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 EXOSC1Q9Y3B2 195 aaKnown RBP10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 NOP16Q9Y3C1 178 aaKnown RBP10.02□□□□□ -0.81
SQSTM1-206ENST00000466342 LOC105371242A0A075B767 164 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 H0YL77 283 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 J3QLW9 94 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 CDC14BO60729 498 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 AVPP01185 164 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 ATP6V1B1P15313 513 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 ZNF19P17023 458 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 MYL12AP19105 171 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 PSMB10P40306 273 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 ETV1P50549 477 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 ST3GAL4Q11206 333 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 HFEQ30201 348 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 FDX2Q6P4F2 183 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 COMMD2Q86X83 199 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 BPIFB2Q8N4F0 458 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 OR51E1Q8TCB6 317 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 PELI1Q96FA3 418 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 RASSF4Q9H2L5 321 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 ISG20L2Q9H9L3 353 aaKnown RBP10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 LPAR2Q9HBW0 351 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 GPR84Q9NQS5 396 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 FKBP14Q9NWM8 211 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 TREM2Q9NZC2 230 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 IL19Q9UHD0 177 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 CAB39Q9Y376 341 aaPredicted RBP10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 PPIAL4AQ9Y536 164 aa10.01□□□□□ -0.81
SQSTM1-206ENST00000466342 TRAV20A0A0B4J274 112 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 ANKRD30BLA7E2S9 258 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 CLDN25C9JDP6 229 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 WNT9BO14905 357 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 GMDSO60547 372 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 MTRF1O75570 445 aaKnown RBP10□□□□□ -0.81
SQSTM1-206ENST00000466342 DHRS3O75911 302 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 HLA-DPB1P04440 258 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 HTR1AP08908 422 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 TNFRSF1AP19438 455 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 CA6P23280 308 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 ACKR3P25106 362 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 MAP2K3P46734 347 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 IL13RA1P78552 427 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 MVKQ03426 396 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 SLC3A1Q07837 685 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 MRPL28Q13084 256 aaKnown RBP10□□□□□ -0.81
SQSTM1-206ENST00000466342 MED21Q13503 144 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 OR8G1Q15617 311 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 SPRNQ5BIV9 151 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 Q6ZSR3 168 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 KLBQ86Z14 1044 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 PRSS35Q8N3Z0 413 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 STX19Q8N4C7 294 aa10□□□□□ -0.81
SQSTM1-206ENST00000466342 FTMTQ8N4E7 242 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms