RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 ITPKCQ96DU7 683 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 C1orf159Q96HA4 380 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 METTL17Q9H7H0 456 aaPredicted RBP15.67■□□□□ 0.1
SHH-203ENST00000435425 ERVK13-1Q9NX77 482 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 ENPP5Q9UJA9 477 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 PPIAL4AQ9Y536 164 aa15.67■□□□□ 0.1
SHH-203ENST00000435425 TLN2Q9Y4G6 2542 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 A0A1B0GVI7 797 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 PTBP3O95758 552 aaKnown RBP15.66■□□□□ 0.1
SHH-203ENST00000435425 IGHA1P01876 353 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 MSMBP08118 114 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 HTR1AP08908 422 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 HOXB4P17483 251 aaPredicted RBP15.66■□□□□ 0.1
SHH-203ENST00000435425 THBS2P35442 1172 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 KIR3DL2P43630 455 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 RIPPLY3P57055 190 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 ACTA2P62736 377 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 ACTG2P63267 376 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 TMEM155Q4W5P6 130 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 PLCXD3Q63HM9 321 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 SFRP4Q6FHJ7 346 aaPredicted RBP15.66■□□□□ 0.1
SHH-203ENST00000435425 IL17RELQ6ZVW7 336 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 DOK3Q7L591 496 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 GLCCI1Q86VQ1 547 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 RDH10Q8IZV5 341 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 MUC20Q8N307 709 aaPredicted RBP15.66■□□□□ 0.1
SHH-203ENST00000435425 OR14K1Q8NGZ2 314 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 OR5P3Q8WZ94 311 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 ISG20L2Q9H9L3 353 aaKnown RBP15.66■□□□□ 0.1
SHH-203ENST00000435425 PATZ1Q9HBE1 687 aaKnown RBP15.66■□□□□ 0.1
SHH-203ENST00000435425 TMEM165Q9HC07 324 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 ABCB9Q9NP78 766 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 MRPS18AQ9NVS2 196 aaKnown RBP15.66■□□□□ 0.1
SHH-203ENST00000435425 V9GYS6 101 aa15.66■□□□□ 0.1
SHH-203ENST00000435425 HIVEP2P31629 2446 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 SYT7O43581 403 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 PLPP2O43688 288 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 GPM6AP51674 278 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 AQP4P55087 323 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 ZNF154Q13106 437 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 C11orf53Q8IXP5 236 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 OR2G2Q8NGZ5 317 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 OR51F2Q8NH61 342 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 HPSE2Q8WWQ2 592 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 RPL3LQ92901 407 aaKnown RBP15.65■□□□□ 0.1
SHH-203ENST00000435425 RNF166Q96A37 237 aaPredicted RBP15.65■□□□□ 0.1
SHH-203ENST00000435425 TMEM246Q9BRR3 403 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 FGF23Q9GZV9 251 aaPredicted RBP15.65■□□□□ 0.1
SHH-203ENST00000435425 GPR173Q9NS66 373 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 HIF1ANQ9NWT6 349 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 FRRS1LQ9P0K9 344 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 MTORP42345 2549 aa15.65■□□□□ 0.1
SHH-203ENST00000435425 CEACAM18A8MTB9 384 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 ZNF732B4DXR9 585 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 C3orf80F5H4A9 247 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 CDIPTO14735 213 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 CRLF1O75462 422 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 NRASP01111 189 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 DVL1P1P54792 670 aaPredicted RBP15.64■□□□□ 0.09
SHH-203ENST00000435425 NANOS3P60323 173 aaKnown RBP15.64■□□□□ 0.09
SHH-203ENST00000435425 GMFBP60983 142 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 SEC61A1P61619 476 aaKnown RBP15.64■□□□□ 0.09
SHH-203ENST00000435425 LCN2P80188 198 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 ZBTB37Q5TC79 503 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 LRRC29Q8WV35 223 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 TMEM186Q96B77 213 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 PELI1Q96FA3 418 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 MYCBPQ99417 103 aaPredicted RBP15.64■□□□□ 0.09
SHH-203ENST00000435425 SHARPINQ9H0F6 387 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 PLEKHA1Q9HB21 404 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 FGF20Q9NP95 211 aaPredicted RBP15.64■□□□□ 0.09
SHH-203ENST00000435425 INPP5EQ9NRR6 644 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 HSPE1-MOB4S4R3N1 261 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 ARHGAP32A7KAX9 2087 aa15.64■□□□□ 0.09
SHH-203ENST00000435425 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.63■□□□□ 0.09
SHH-203ENST00000435425 IGHV3OR15-7A0A075B7D8 119 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 LOC107986453A0A1B0GWG9 222 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 RPS2P15880 293 aaKnown RBP15.63■□□□□ 0.09
SHH-203ENST00000435425 EGR1P18146 543 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 CR1LQ2VPA4 569 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 CEACAM21Q3KPI0 293 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 ZNF404Q494X3 552 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 CLVS2Q5SYC1 327 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 LYPD2Q6UXB3 125 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 GCSAMQ8N6F7 178 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 SCCPDHQ8NBX0 429 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 TFAP2CQ92754 450 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 ITFG2Q969R8 447 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 ZNF649Q9BS31 505 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 BEX2Q9BXY8 128 aa15.63■□□□□ 0.09
SHH-203ENST00000435425 FN1P02751 2386 aaKnown RBP15.63■□□□□ 0.09
SHH-203ENST00000435425 IRGMA1A4Y4 181 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 TMEM210A6NLX4 147 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 LGALS8O00214 317 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 UBCP0CG48 685 aaKnown RBP15.62■□□□□ 0.09
SHH-203ENST00000435425 LIMS3P0CW19 117 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 LIMS4P0CW20 117 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 CCL1P22362 96 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 ETV1P50549 477 aa15.62■□□□□ 0.09
SHH-203ENST00000435425 GNG3P63215 75 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms