RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 AAMDCQ9H7C9 122 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 SIAEQ9HAT2 523 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 OPN1MWP04001 364 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 OPN1MW2P0DN77 364 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 OPN1MW3P0DN78 364 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 OR2B8PP59922 312 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 SLC25A35Q3KQZ1 300 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 SYS1Q8N2H4 156 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 OR1L3Q8NH93 324 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 RFESDQ8TAC1 157 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 GABARAPL1Q9H0R8 117 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 ZNF629Q9UEG4 869 aaPredicted RBP13.83□□□□□ -0.2
PTPRF-206ENST00000429895 PPM1DO15297 605 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 TMEM208Q9BTX3 173 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 LILRA5A6NI73 299 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 ZDHHC11BP0C7U3 371 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 SPINK2P20155 84 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 DHRS7BQ6IAN0 325 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-206ENST00000429895 TREM2Q9NZC2 230 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 CYR61O00622 381 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 FCGR3BO75015 233 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 CST7O76096 145 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 THBS4P35443 961 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 AMTP48728 403 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 RHOBP62745 196 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 RPP25Q9BUL9 199 aaKnown RBP13.82□□□□□ -0.2
PTPRF-206ENST00000429895 TMPRSS13Q9BYE2 586 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 SLC25A19Q9HC21 320 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 ZNF230Q9UIE0 474 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-206ENST00000429895 ARID1BQ8NFD5 2236 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-206ENST00000429895 SPP1P10451 314 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 BMI1P35226 326 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 LIMK1P53667 647 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 ERVFC1-1P60608 527 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 FMODQ06828 376 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 SPNS3Q6ZMD2 512 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 LYG2Q86SG7 212 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 PRR7Q8TB68 274 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 LOC102723971A0A1B0GUV8 181 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 PCBP4P57723 403 aaKnown RBP13.82□□□□□ -0.2
PTPRF-206ENST00000429895 DERL3Q96Q80 235 aa13.82□□□□□ -0.2
PTPRF-206ENST00000429895 FAM157AC9JC47 383 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 K7EQS6 105 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 ST8SIA5O15466 376 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 GABRB1P18505 474 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 NCR3LG1Q68D85 454 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 VN1R1Q9GZP7 353 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 C3orf80F5H4A9 247 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 DUS4LO95620 317 aaKnown RBP13.81□□□□□ -0.2
PTPRF-206ENST00000429895 TMEM65Q6PI78 240 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 BCL2L10Q9HD36 194 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 LAMP3Q9UQV4 416 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 SUMO3P55854 103 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-206ENST00000429895 KRTDAPP60985 99 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 ZNF117Q03924 483 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 BLNKQ8WV28 456 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 TMPRSS5Q9H3S3 457 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 PLEKHA2Q9HB19 425 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 PSG11Q9UQ72 335 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 PPIL1Q9Y3C6 166 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 A0A1W2PPQ1 181 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 NGFP01138 241 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 SRSF5Q13243 272 aaKnown RBP13.81□□□□□ -0.2
PTPRF-206ENST00000429895 GPNMBQ14956 572 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 TRIP6Q15654 476 aaKnown RBP13.81□□□□□ -0.2
PTPRF-206ENST00000429895 SP6Q3SY56 376 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 MAMSTRQ6ZN01 415 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 IL21Q9HBE4 155 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 IGHV5-51A0A0C4DH38 117 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 HYAL3O43820 417 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-206ENST00000429895 CPN1P15169 458 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 ZNF528Q3MIS6 628 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 FAM27D1Q5T7N8 215 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 FAM219BQ5XKK7 198 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 ANKRD37Q7Z713 158 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 RAB18Q9NP72 206 aa13.81□□□□□ -0.2
PTPRF-206ENST00000429895 CHD2O14647 1828 aaKnown RBP13.81□□□□□ -0.2
PTPRF-206ENST00000429895 TIAM2Q8IVF5 1701 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 CXCL10P02778 98 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 TNFAIP6P98066 277 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-206ENST00000429895 CDK5Q00535 292 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 LINC00615Q96LM1 132 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-206ENST00000429895 CDCA4Q9BXL8 241 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 TAAR3PQ9P1P4 343 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 SERGEFQ9UGK8 458 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 LAMB4A4D0S4 1761 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 FUCA1P04066 466 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 ASAH1Q13510 395 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 GAMTQ14353 236 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 CABLES2Q9BTV7 478 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 KLK11Q9UBX7 282 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 FZD5Q13467 585 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 C1orf210Q8IVY1 113 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 OR6S1Q8NH40 331 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 BCL2L2Q92843 193 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-206ENST00000429895 TMEM147Q9BVK8 224 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 SRRQ9GZT4 340 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 SLC26A1Q9H2B4 701 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 UBTD1Q9HAC8 227 aa13.8□□□□□ -0.2
PTPRF-206ENST00000429895 C12orf10Q9HB07 376 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms