RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 OR52H1Q8NGJ2 320 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 OR2T29Q8NH02 315 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 PKP2Q99959 881 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 NIPSNAP1Q9BPW8 284 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 RBM4BQ9BQ04 359 aaKnown RBP11.94□□□□□ -0.5
SDC1-204ENST00000429035 CMC2Q9NRP2 79 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 ZNRD1Q9P1U0 126 aa11.94□□□□□ -0.5
SDC1-204ENST00000429035 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.93□□□□□ -0.5
SDC1-204ENST00000429035 NPFFO15130 113 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 AKR7A2O43488 359 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 SELENOFO60613 162 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 DCTN3O75935 186 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 TSPAN15O95858 294 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 NDUFB7P17568 137 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 PAICSP22234 425 aaKnown RBP11.93□□□□□ -0.5
SDC1-204ENST00000429035 POU1F1P28069 291 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 PRDX4Q13162 271 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 SNCBQ16143 134 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 TAF9Q16594 264 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 MICAQ29983 383 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 FAM98BQ52LJ0 330 aaKnown RBP11.93□□□□□ -0.5
SDC1-204ENST00000429035 STUMQ69YW2 141 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 Q6ZSV7 163 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 RHOUQ7L0Q8 258 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 SHFQ7M4L6 423 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 C1QL4Q86Z23 238 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 TIGD4Q8IY51 512 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 FAM81AQ8TBF8 368 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 THEM6Q8WUY1 208 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 RNF133Q8WVZ7 376 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 PIGCQ92535 297 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 DCTN5Q9BTE1 182 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 DGCR6LQ9BY27 220 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 WDR13Q9H1Z4 485 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 MAGIXQ9H6Y5 334 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 ELL3Q9HB65 397 aaPredicted RBP11.93□□□□□ -0.5
SDC1-204ENST00000429035 ZNF319Q9P2F9 582 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 VPREB3Q9UKI3 123 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 ARL2BPQ9Y2Y0 163 aa11.93□□□□□ -0.5
SDC1-204ENST00000429035 TCRBV5S2A0A599 114 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 MEIOCA2RUB1 952 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 ANKRD61A6NGH8 418 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 RNASEK-C17orf49H0YIS7 233 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 GLCEO94923 617 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 LYNP07948 512 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 OPRL1P41146 370 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 GABRA2P47869 451 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 PROK1P58294 105 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 RPS7P62081 194 aaKnown RBP11.92□□□□□ -0.5
SDC1-204ENST00000429035 C11orf91Q3C1V1 193 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 ASPHD2Q6ICH7 369 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 COMMD2Q86X83 199 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 DHFR2Q86XF0 187 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 ZDHHC23Q8IYP9 409 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 LY6G5BQ8NDX9 201 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 FAM110DQ8TAY7 271 aaPredicted RBP11.92□□□□□ -0.5
SDC1-204ENST00000429035 C12orf43Q96C57 262 aaKnown RBP11.92□□□□□ -0.5
SDC1-204ENST00000429035 CCDC124Q96CT7 223 aaKnown RBP11.92□□□□□ -0.5
SDC1-204ENST00000429035 ITPKCQ96DU7 683 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 RNF170Q96K19 258 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 HAO2Q9NYQ3 351 aa11.92□□□□□ -0.5
SDC1-204ENST00000429035 SLC25A10Q9UBX3 287 aaPredicted RBP11.92□□□□□ -0.5
SDC1-204ENST00000429035 SLC22A31A6NKX4 558 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 TMEM210A6NLX4 147 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 PRR23D1E9PI22 279 aaPredicted RBP11.91□□□□□ -0.5
SDC1-204ENST00000429035 PRR23D2P0DMB1 279 aaPredicted RBP11.91□□□□□ -0.5
SDC1-204ENST00000429035 AMY2BP19961 511 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 ACKR3P25106 362 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 SAA4P35542 130 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 GYS2P54840 703 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 EGR3Q06889 387 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 SPATS1Q496A3 300 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 LCN8Q6JVE9 175 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 PLBD1Q6P4A8 553 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 PRSS45Q7RTY3 260 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 FAM185AQ8N0U4 392 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 GALNT4Q8N4A0 578 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 TMEM185AQ8NFB2 350 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 LRGUKQ96M69 825 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 GAFA1Q96PS6 74 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 HIST1H2AAQ96QV6 131 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 PPA2Q9H2U2 334 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 RGCCQ9H4X1 137 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 ABCB9Q9NP78 766 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 MPC1Q9Y5U8 109 aa11.91□□□□□ -0.5
SDC1-204ENST00000429035 B2RBV5 119 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 GPR37O15354 613 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 CLPXO76031 633 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 GLRA1P23415 457 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 GPM6AP51674 278 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 CAPZA1P52907 286 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 PSMA6P60900 246 aaKnown RBP11.9□□□□□ -0.5
SDC1-204ENST00000429035 BLMHQ13867 455 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 DGUOKQ16854 277 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 C2orf68Q2NKX9 166 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 CEP78Q5JTW2 689 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 METAP1DQ6UB28 335 aaPredicted RBP11.9□□□□□ -0.5
SDC1-204ENST00000429035 Q8N7P7 452 aa11.9□□□□□ -0.5
SDC1-204ENST00000429035 ZSCAN4Q8NAM6 433 aaPredicted RBP11.9□□□□□ -0.5
SDC1-204ENST00000429035 OR8B12Q8NGG6 310 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms