RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 B3GALT5Q9Y2C3 310 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 PCDHGA1Q9Y5H4 931 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 A0A1B0GV50 99 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 H7C417 338 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 ETV2O00321 342 aaPredicted RBP7.35□□□□□ -1.23
CD44-208ENST00000428726 AQP8O94778 261 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 ZNF17P17021 662 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 FSTP19883 344 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 IL32P24001 234 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 RPL35P42766 123 aaKnown RBP7.35□□□□□ -1.23
CD44-208ENST00000428726 FXYD4P59646 89 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 UBE2V2Q15819 145 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 PCK2Q16822 640 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 CEACAM16Q2WEN9 425 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 CLLU1Q5K131 121 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 DCAF12Q5T6F0 453 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 DEGS2Q6QHC5 323 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 ZNF584Q8IVC4 421 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 OR2Y1Q8NGV0 311 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 LYZL4Q96KX0 146 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 MRGPRX4Q96LA9 322 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 MFFQ9GZY8 342 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 MTFP1Q9UDX5 166 aa7.35□□□□□ -1.23
CD44-208ENST00000428726 MRPS28Q9Y2Q9 187 aaKnown RBP7.35□□□□□ -1.23
CD44-208ENST00000428726 IGKV1D-8A0A087WSZ0 117 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 MEGF11A6BM72 1044 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 C5orf51A6NDU8 294 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 FAM74A7A6NL05 159 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 C9orf172C9J069 976 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 HOXD4P09016 255 aaPredicted RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 CSF1P09603 554 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 RAB3AP20336 220 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 ACKR3P25106 362 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 CD96P40200 585 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 P2RY4P51582 365 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 LUMP51884 338 aaPredicted RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 SEC61A1P61619 476 aaKnown RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 SP6Q3SY56 376 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 FAM74A3Q4VXF1 159 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 PLAC9Q5JTB6 97 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 FAM166AQ6J272 317 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 GLDNQ6ZMI3 551 aaPredicted RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 PPP1R32Q7Z5V6 425 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 OR10D3Q8NH80 312 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 RNF133Q8WVZ7 376 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 PIGCQ92535 297 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 TOMM40LQ969M1 308 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 IMMP1LQ96LU5 166 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 UTP23Q9BRU9 249 aaKnown RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 PRRG4Q9BZD6 226 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 CST11Q9H112 138 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 WDR13Q9H1Z4 485 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 FANCFQ9NPI8 374 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 CRIM1Q9NZV1 1036 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 NPTNQ9Y639 398 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 A0A1B0GTI1 187 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 PLSCR5A0PG75 271 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 TMEM82A0PJX8 343 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 UBE2QL1A1L167 161 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 ARGFXA6NJG6 315 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 OR2AT4A6NND4 320 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 RAB27BO00194 218 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 SRSF10O75494 262 aaKnown RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 RP2O75695 350 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 NDUFB6O95139 128 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 TNFSF15O95150 251 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 ISG15P05161 165 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 ERCC1P07992 297 aaPredicted RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 CYC1P08574 325 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 LIFP15018 202 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 ZNF32P17041 273 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 BLVRBP30043 206 aaPredicted RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 S100A11P31949 105 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 MECP2P51608 486 aaKnown RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 SLC25A53Q5H9E4 307 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 PNLDC1Q8NA58 520 aaKnown RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 ZC3H10Q96K80 434 aaKnown RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 ZNF471Q9BX82 626 aaPredicted RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 MRPL13Q9BYD1 178 aaKnown RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 GPN1Q9HCN4 374 aaPredicted RBP7.34□□□□□ -1.23
CD44-208ENST00000428726 IL36RNQ9UBH0 155 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 VSIG4Q9Y279 399 aa7.34□□□□□ -1.23
CD44-208ENST00000428726 PLCE1Q9P212 2302 aa7.34□□□□□ -1.24
CD44-208ENST00000428726 IGLV3-32A0A0A0MS00 114 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 A0A1W2PNV4 684 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 ZNF878C9JN71 531 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 ZNF587BE7ETH6 402 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 TOR1AO14656 332 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 TFF1P04155 84 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 IFNA6P05013 189 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 IL5P05113 134 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 HOXB5P09067 269 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 CD79AP11912 226 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 CPN1P15169 458 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 PPP3CBP16298 524 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 PRKACAP17612 351 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 IGFBP3P17936 291 aaPredicted RBP7.33□□□□□ -1.24
CD44-208ENST00000428726 GLRA1P23415 457 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 HTR5AP47898 357 aa7.33□□□□□ -1.24
CD44-208ENST00000428726 ASCL1P50553 236 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms