RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 RNF7Q9UBF6 113 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 ENPP5Q9UJA9 477 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 PIGLQ9Y2B2 252 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 V9GYS6 101 aa18.25■□□□□ 0.51
CLN3-207ENST00000395653 PPIAL4EA0A075B759 164 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 FAM157AC9JC47 383 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 PPIAL4DF5H284 164 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 PPIAL4FP0DN26 164 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 PSMB10P40306 273 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 FDX2Q6P4F2 183 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 KLHL36Q8N4N3 616 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 OR1M1Q8NGA1 313 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 OR14K1Q8NGZ2 314 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 OR2G2Q8NGZ5 317 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 C4orf36Q96KX1 117 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 TMEM160Q9NX00 188 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 UBAP1Q9NZ09 502 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 KCNS2Q9ULS6 477 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 PPIAL4AQ9Y536 164 aa18.24■□□□□ 0.51
CLN3-207ENST00000395653 A0A1B0GVI7 797 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 A6NLC8 198 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 TMEM210A6NLX4 147 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 J3QLW9 94 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 LMX1BO60663 402 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 UBCP0CG48 685 aaKnown RBP18.23■□□□□ 0.51
CLN3-207ENST00000395653 FAHP16930 419 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 ZNF19P17023 458 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 RIPPLY3P57055 190 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 ZNF154Q13106 437 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 RIPK1Q13546 671 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 CCDC54Q8NEL0 328 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 FBLIM1Q8WUP2 373 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 HPSE2Q8WWQ2 592 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 PELI1Q96FA3 418 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 HIST1H2AAQ96QV6 131 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 TLNRD1Q9H1K6 362 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 VCX3BQ9H321 246 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 C1orf123Q9NWV4 160 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 SONP18583 2426 aaKnown RBP18.23■□□□□ 0.51
CLN3-207ENST00000395653 ANK3Q12955 4377 aaKnown RBP18.23■□□□□ 0.51
CLN3-207ENST00000395653 SYT7O43581 403 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 HTR1AP08908 422 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 DCKP27707 260 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 KIR3DL2P43630 455 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 AQP4P55087 323 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 MRPL28Q13084 256 aaKnown RBP18.23■□□□□ 0.51
CLN3-207ENST00000395653 ODF4Q2M2E3 257 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 FAM76BQ5HYJ3 339 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 C11orf53Q8IXP5 236 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 PATZ1Q9HBE1 687 aaKnown RBP18.23■□□□□ 0.51
CLN3-207ENST00000395653 TMEM165Q9HC07 324 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 PCDHB10Q9UN67 800 aa18.23■□□□□ 0.51
CLN3-207ENST00000395653 MSMBP08118 114 aa18.22■□□□□ 0.51
CLN3-207ENST00000395653 THBS2P35442 1172 aa18.22■□□□□ 0.51
CLN3-207ENST00000395653 CCR9P51686 369 aa18.22■□□□□ 0.51
CLN3-207ENST00000395653 DVL1P1P54792 670 aaPredicted RBP18.22■□□□□ 0.51
CLN3-207ENST00000395653 CEACAM21Q3KPI0 293 aa18.22■□□□□ 0.51
CLN3-207ENST00000395653 ZNF404Q494X3 552 aa18.22■□□□□ 0.51
CLN3-207ENST00000395653 FAM201AQ5SY85 155 aa18.22■□□□□ 0.51
CLN3-207ENST00000395653 ZNF826PQ6ZT77 177 aa18.22■□□□□ 0.51
CLN3-207ENST00000395653 ZNF771Q7L3S4 317 aaPredicted RBP18.22■□□□□ 0.51
CLN3-207ENST00000395653 OR51F2Q8NH61 342 aa18.22■□□□□ 0.51
CLN3-207ENST00000395653 RNF170Q96K19 258 aa18.22■□□□□ 0.51
CLN3-207ENST00000395653 FGF23Q9GZV9 251 aaPredicted RBP18.22■□□□□ 0.51
CLN3-207ENST00000395653 FRRS1LQ9P0K9 344 aa18.22■□□□□ 0.51
CLN3-207ENST00000395653 MALRD1Q5VYJ5 2156 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 OR5B21A6NL26 309 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 CEACAM18A8MTB9 384 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 ZNF205O95201 554 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 LIMS3P0CW19 117 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 LIMS4P0CW20 117 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 ZNF12P17014 697 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 CPT2P23786 658 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 NANOS3P60323 173 aaKnown RBP18.21■□□□□ 0.51
CLN3-207ENST00000395653 CLVS2Q5SYC1 327 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 TMEM244Q5VVB8 128 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 TMEM42Q69YG0 159 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 GLCCI1Q86VQ1 547 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 GCSAMQ8N6F7 178 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 OR5A2Q8NGI9 324 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 HAVCR2Q8TDQ0 301 aa18.21■□□□□ 0.51
CLN3-207ENST00000395653 ISG20L2Q9H9L3 353 aaKnown RBP18.21■□□□□ 0.51
CLN3-207ENST00000395653 DIMT1Q9UNQ2 313 aaKnown RBP18.21■□□□□ 0.51
CLN3-207ENST00000395653 C2CD3Q4AC94 2353 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 LOC107986453A0A1B0GWG9 222 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 hCG_1807616A0A1W2PRN6 198 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 F5H0A9 414 aaPredicted RBP18.2■□□□□ 0.5
CLN3-207ENST00000395653 CRLF1O75462 422 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 ATP6V1G2O95670 118 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 NRASP01111 189 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 LHBP01229 141 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 ISG15P05161 165 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 PIPP12273 146 aaPredicted RBP18.2■□□□□ 0.5
CLN3-207ENST00000395653 CFHR2P36980 270 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 GNG3P63215 75 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 CSNK2BP67870 215 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 CEP78Q5JTW2 689 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 PLCXD3Q63HM9 321 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 LAIR2Q6ISS4 152 aa18.2■□□□□ 0.5
CLN3-207ENST00000395653 WDR82Q6UXN9 313 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms