RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 OR1M1Q8NGA1 313 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 OR56B2PQ8NGI1 322 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 SLC25A28Q96A46 364 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 MGLLQ99685 303 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 NUDT16L1Q9BRJ7 211 aaKnown RBP5.92□□□□□ -1.46
LIMA1-202ENST00000394943 COMMD4Q9H0A8 199 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 RAB1BQ9H0U4 201 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 GCM1Q9NP62 436 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 C14orf119Q9NWQ9 140 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 ZNF222Q9UK12 451 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 GRIP1Q9Y3R0 1128 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 IGKV1-27A0A075B6S5 117 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 MAGEA13PA6NCF6 341 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-202ENST00000394943 J3QLW9 94 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 PGA5P0DJD9 388 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 BMP4P12644 408 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 ZNF19P17023 458 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 PRKACBP22694 351 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 LMO1P25800 156 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 SRP9P49458 86 aaKnown RBP5.92□□□□□ -1.46
LIMA1-202ENST00000394943 PAX2Q02962 417 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 TAF13Q15543 124 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 MRPL21Q7Z2W9 205 aaKnown RBP5.92□□□□□ -1.46
LIMA1-202ENST00000394943 ANKRD13BQ86YJ7 626 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 OR51T1Q8NGJ9 327 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 C8orf46Q8TAG6 207 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 GHSRQ92847 366 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 PPP1R14AQ96A00 147 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 PTX4Q96A99 478 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 GFI1Q99684 422 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 C1QTNF6Q9BXI9 259 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 CENPMQ9NSP4 180 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 HELZ2Q9BYK8 2649 aaKnown RBP5.91□□□□□ -1.46
LIMA1-202ENST00000394943 ADGRG4Q8IZF6 3080 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 ARFGEF3Q5TH69 2177 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A10PA6NDY2 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A18PA6NE21 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A16PA6NEW6 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A20PA6NIJ5 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A8PA6NJQ4 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A7PA6NKC0 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A22PA8MWA6 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A12PA8MX19 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A5PA8MXJ8 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A23PA8MXZ1 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 TMEM178BH3BS89 294 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 MYL12BO14950 172 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 MAGEB4O15481 346 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-202ENST00000394943 SULT1B1O43704 296 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 TFAP2AP05549 437 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A15PP0C7V4 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A13PP0C7W8 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A14PP0C7W9 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM90A24PP0C7X0 464 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 FAM157BP0CG42 384 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 GTF2A1P52655 376 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-202ENST00000394943 TMEM33P57088 247 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 SELENOVP59797 346 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 PRDX4Q13162 271 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 LINC00596Q86U02 117 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 ZDHHC23Q8IYP9 409 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 NKAIN3Q8N8D7 197 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 TSPAN14Q8NG11 270 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 GATAD2BQ8WXI9 593 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 AQP3Q92482 292 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 UFD1Q92890 307 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 RBM38Q9H0Z9 239 aaKnown RBP5.91□□□□□ -1.46
LIMA1-202ENST00000394943 TPK1Q9H3S4 243 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 METTL17Q9H7H0 456 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-202ENST00000394943 AMBNQ9NP70 447 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 GHRLQ9UBU3 117 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 CR1P17927 2039 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 A0A0G2JK05 382 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 CCRL2O00421 344 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 AKR7A2O43488 359 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 RGS9O75916 674 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-202ENST00000394943 ANXA2P07355 339 aaKnown RBP5.91□□□□□ -1.46
LIMA1-202ENST00000394943 PRSS12P56730 875 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 CR1LQ2VPA4 569 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 LRRC28Q86X40 367 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-202ENST00000394943 OR2AE1Q8NHA4 323 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 GTF3AQ92664 365 aaKnown RBP5.91□□□□□ -1.46
LIMA1-202ENST00000394943 NRIP2Q9BQI9 281 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 TMUB1Q9BVT8 246 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 RERGLQ9H628 205 aa5.91□□□□□ -1.46
LIMA1-202ENST00000394943 CHCHD3Q9NX63 227 aaKnown RBP5.91□□□□□ -1.46
LIMA1-202ENST00000394943 TRBV2A0A0J9YWF9 115 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 P2RY10O00398 339 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 SLC22A1O15245 554 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 APOL3O95236 402 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 THBS2P35442 1172 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 PRKXP51817 358 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 CDH15P55291 814 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 CNN3Q15417 329 aaKnown RBP5.9□□□□□ -1.46
LIMA1-202ENST00000394943 TIGD6Q17RP2 521 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 SPRNQ5BIV9 151 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 OR2T2Q6IF00 324 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 WDR82Q6UXN9 313 aa5.9□□□□□ -1.46
LIMA1-202ENST00000394943 SLC16A12Q6ZSM3 486 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms