RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.56□□□□□ -0.88
NEDD9-201ENST00000379433 WDR54Q9H977 334 aa9.56□□□□□ -0.88
NEDD9-201ENST00000379433 CKLFQ9UBR5 152 aa9.56□□□□□ -0.88
NEDD9-201ENST00000379433 C5orf63A6NC05 138 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 AIPO00170 330 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 DBHP09172 617 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 DCTDP32321 178 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 MC5RP33032 325 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 CYB561P49447 251 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 ARL6IP1Q15041 203 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 MPPED2Q15777 294 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 ZNF544Q6NX49 715 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 TMPPEQ6ZT21 453 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 STOML3Q8TAV4 291 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 SFT2D1Q8WV19 159 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 CHIAQ9BZP6 476 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 SLC5A7Q9GZV3 580 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 GAL3ST2Q9H3Q3 398 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 POFUT1Q9H488 388 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 DEPPQ9NTK1 212 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 PINLYPA6NC86 204 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 PDCD5O14737 125 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 SYT7O43581 403 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 MT-CO3P00414 261 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 ZNF81P51508 661 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 MAP2K6P52564 334 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 PLEKHN1Q494U1 663 aaPredicted RBP9.55□□□□□ -0.88
NEDD9-201ENST00000379433 PRAMEF5Q5TYX0 476 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 PRAMEF6Q5VXH4 476 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 ZNF767PQ75MW2 155 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 CMBLQ96DG6 245 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 SIRT7Q9NRC8 400 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 GDF2Q9UK05 429 aaPredicted RBP9.55□□□□□ -0.88
NEDD9-201ENST00000379433 FBXO4Q9UKT5 387 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 NUBP2Q9Y5Y2 271 aa9.55□□□□□ -0.88
NEDD9-201ENST00000379433 ADAMTS20P59510 1910 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 A6NIZ1 184 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 ZIC3O60481 467 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 KRT33AO76009 404 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 CSTBP04080 98 aaKnown RBP9.54□□□□□ -0.88
NEDD9-201ENST00000379433 RBMS1P29558 406 aaKnown RBP9.54□□□□□ -0.88
NEDD9-201ENST00000379433 ART1P52961 327 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 MLF1P58340 268 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 RAP1BP61224 184 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 RAP1AP62834 184 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 PHYHD1Q5SRE7 291 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 SLC25A38Q96DW6 304 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 EXO5Q9H790 373 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 TRAV1-2A0A0B4J238 106 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 TEX13DA0A0J9YY54 714 aaPredicted RBP9.54□□□□□ -0.88
NEDD9-201ENST00000379433 A0A1W2PPQ1 181 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 OR5H15A6NDH6 313 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 ORC5O43913 435 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 ONECUT2O95948 504 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 RLN1P04808 185 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 YES1P07947 543 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 CALCBP10092 127 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 LIPCP11150 499 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 LIFP15018 202 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 CSNK1A1P48729 337 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 TMEM255AQ5JRV8 349 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 ABHD17BQ5VST6 288 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 PET117Q6UWS5 81 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 ABHD3Q8WU67 409 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 SIGLEC12Q96PQ1 595 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 SRXN1Q9BYN0 137 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 PARD6AQ9NPB6 346 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 ANKRD11Q6UB99 2663 aaPredicted RBP9.54□□□□□ -0.88
NEDD9-201ENST00000379433 TRAF3IP2O43734 574 aaPredicted RBP9.54□□□□□ -0.88
NEDD9-201ENST00000379433 ITGB2P05107 769 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 ACP1P24666 158 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 PNLIPRP3Q17RR3 467 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 FGD2Q7Z6J4 655 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 RNF128Q8TEB7 428 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 ASB5Q8WWX0 329 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 MISP3Q96FF7 219 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 GPER1Q99527 375 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 C1orf198Q9H425 327 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 PLEKHA1Q9HB21 404 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 PROK2Q9HC23 129 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 TMEM9BQ9NQ34 198 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 B3GNT2Q9NY97 397 aa9.54□□□□□ -0.88
NEDD9-201ENST00000379433 CADP27708 2225 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 IGF2RP11717 2491 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 CPAMD8Q8IZJ3 1885 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 ZNF716A6NP11 495 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 SSNA1O43805 119 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 ZNF735P0CB33 412 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 B4GALT1P15291 398 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 UBE2MP61081 183 aaKnown RBP9.53□□□□□ -0.88
NEDD9-201ENST00000379433 PLGLB1Q02325 96 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 POU4F3Q15319 338 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 DND1Q8IYX4 353 aaKnown RBP9.53□□□□□ -0.88
NEDD9-201ENST00000379433 ZNF101Q8IZC7 436 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 SETD6Q8TBK2 473 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 CACNG8Q8WXS5 425 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 DPF1Q92782 380 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 LIN37Q96GY3 246 aaPredicted RBP9.53□□□□□ -0.88
NEDD9-201ENST00000379433 PLEK2Q9NYT0 353 aa9.53□□□□□ -0.88
NEDD9-201ENST00000379433 DNAJB11Q9UBS4 358 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms