RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 SCGB3A2Q96PL1 93 aa14.45□□□□□ -0.1
SDC4-201ENST00000372733 OR10A2Q9H208 303 aa14.45□□□□□ -0.1
SDC4-201ENST00000372733 C8orf33Q9H7E9 229 aaPredicted RBP14.45□□□□□ -0.1
SDC4-201ENST00000372733 FANCFQ9NPI8 374 aa14.45□□□□□ -0.1
SDC4-201ENST00000372733 FBXL17Q9UF56 701 aa14.45□□□□□ -0.1
SDC4-201ENST00000372733 B3GALT5Q9Y2C3 310 aa14.45□□□□□ -0.1
SDC4-201ENST00000372733 FER1L5A0AVI2 2057 aa14.45□□□□□ -0.1
SDC4-201ENST00000372733 METTL12A8MUP2 240 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 FAM157AC9JC47 383 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 RNF4P78317 190 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 IAH1Q2TAA2 248 aaPredicted RBP14.44□□□□□ -0.1
SDC4-201ENST00000372733 FAM76BQ5HYJ3 339 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 EIF5AL1Q6IS14 154 aaKnown RBP14.44□□□□□ -0.1
SDC4-201ENST00000372733 OR2AJ1Q8NGZ0 328 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 DDIT4LQ96D03 193 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 MVB12AQ96EY5 273 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 ZDHHC12Q96GR4 267 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 KIRREL1Q96J84 757 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 MRPL13Q9BYD1 178 aaKnown RBP14.44□□□□□ -0.1
SDC4-201ENST00000372733 MOB1AQ9H8S9 216 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 UCK1Q9HA47 277 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 ALKBH4Q9NXW9 302 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 EDARQ9UNE0 448 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 PRUNE2Q8WUY3 3088 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 ASXL3Q9C0F0 2248 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 EFNA2O43921 213 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 HOXB1P14653 301 aaPredicted RBP14.44□□□□□ -0.1
SDC4-201ENST00000372733 CPT2P23786 658 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 APOBEC1P41238 236 aaKnown RBP14.44□□□□□ -0.1
SDC4-201ENST00000372733 RAB5BP61020 215 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 S100A12P80511 92 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 RBMS3Q6XE24 437 aaKnown RBP14.44□□□□□ -0.1
SDC4-201ENST00000372733 GKN2Q86XP6 184 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 NOXO1Q8NFA2 376 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 SECTM1Q8WVN6 248 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 URM1Q9BTM9 101 aaKnown RBP14.44□□□□□ -0.1
SDC4-201ENST00000372733 NKX2-4Q9H2Z4 354 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 RNF122Q9H9V4 155 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 SMCO4Q9NRQ5 59 aa14.44□□□□□ -0.1
SDC4-201ENST00000372733 E9PLN8 166 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 FOLR1P15328 257 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 NME1P15531 152 aaKnown RBP14.43□□□□□ -0.1
SDC4-201ENST00000372733 PPT1P50897 306 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 EIF5AP63241 154 aaKnown RBP14.43□□□□□ -0.1
SDC4-201ENST00000372733 ACY1Q03154 408 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 MYBPHQ13203 477 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 TGIF1Q15583 401 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 SLC16A13Q7RTY0 426 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 NANPQ8TBE9 248 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 LIN37Q96GY3 246 aaPredicted RBP14.43□□□□□ -0.1
SDC4-201ENST00000372733 IGKV1D-8A0A087WSZ0 117 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 VSTM2BA6NLU5 285 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 RPL12P30050 165 aaKnown RBP14.43□□□□□ -0.1
SDC4-201ENST00000372733 OR1D5P58170 312 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 TAS2R46P59540 309 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 FBXO46Q6PJ61 603 aaPredicted RBP14.43□□□□□ -0.1
SDC4-201ENST00000372733 FBXO17Q96EF6 278 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 CNTNAP3Q9BZ76 1288 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 TPSD1Q9BZJ3 242 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 CACFD1Q9UGQ2 172 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 RPH3AQ9Y2J0 694 aaPredicted RBP14.43□□□□□ -0.1
SDC4-201ENST00000372733 MEMO1Q9Y316 297 aa14.43□□□□□ -0.1
SDC4-201ENST00000372733 K7EPK0 472 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 TAAR5O14804 337 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 FOSL2P15408 326 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 BLVRBP30043 206 aaPredicted RBP14.42□□□□□ -0.1
SDC4-201ENST00000372733 FCGR2CP31995 323 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 GABREP78334 506 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 C17orf67Q0P5P2 114 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 FAM71E2Q8N5Q1 922 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 HIST1H2BAQ96A08 127 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 CHRNA10Q9GZZ6 450 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 PARP11Q9NR21 331 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 ZNF701Q9NV72 531 aaPredicted RBP14.42□□□□□ -0.1
SDC4-201ENST00000372733 A0A1W2PNV4 684 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 CST4P01036 141 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 PGA4P0DJD7 388 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 PGA3P0DJD8 388 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 SERPINA2P20848 420 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 PTAFRP25105 342 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 ADH6P28332 368 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 RBMXP38159 391 aaKnown RBP14.42□□□□□ -0.1
SDC4-201ENST00000372733 HGFACQ04756 655 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 CHRFAM7AQ494W8 412 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 THEM4Q5T1C6 240 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 CLEC9AQ6UXN8 241 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 UEVLDQ8IX04 471 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 ZNF283Q8N7M2 679 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 RHBDD1Q8TEB9 315 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 EMG1Q92979 244 aaKnown RBP14.42□□□□□ -0.1
SDC4-201ENST00000372733 NAA11Q9BSU3 229 aaPredicted RBP14.42□□□□□ -0.1
SDC4-201ENST00000372733 PNRC2Q9NPJ4 139 aaKnown RBP14.42□□□□□ -0.1
SDC4-201ENST00000372733 RPS10P5Q9NQ39 176 aa14.42□□□□□ -0.1
SDC4-201ENST00000372733 FIGNL2A6NMB9 653 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 RHPN2P1A8MT19 583 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 ZNF814B7Z6K7 855 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 IFNA2P01563 188 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 IGLV3-19P01714 112 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 FOLR2P14207 255 aa14.41□□□□□ -0.1
SDC4-201ENST00000372733 DVL1P1P54792 670 aaPredicted RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms