RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 KCNK17Q96T54 332 aa19.76■□□□□ 0.75
TRIM28-202ENST00000341753 VDAC3Q9Y277 283 aa19.76■□□□□ 0.75
TRIM28-202ENST00000341753 RTTNQ86VV8 2226 aa19.76■□□□□ 0.75
TRIM28-202ENST00000341753 FTCDNL1E5RQL4 147 aa19.76■□□□□ 0.75
TRIM28-202ENST00000341753 SCGB1D2O95969 90 aa19.76■□□□□ 0.75
TRIM28-202ENST00000341753 IAH1Q2TAA2 248 aaPredicted RBP19.76■□□□□ 0.75
TRIM28-202ENST00000341753 DNM1P34Q6PK57 102 aa19.76■□□□□ 0.75
TRIM28-202ENST00000341753 ZC3HAV1Q7Z2W4 902 aaKnown RBP19.76■□□□□ 0.75
TRIM28-202ENST00000341753 OR5AS1Q8N127 324 aa19.76■□□□□ 0.75
TRIM28-202ENST00000341753 ZNF251Q9BRH9 671 aa19.76■□□□□ 0.75
TRIM28-202ENST00000341753 TMEM131Q92545 1883 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 A0A1B0GV50 99 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 H3BML4 177 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 IGLV3-19P01714 112 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 RPS2P15880 293 aaKnown RBP19.75■□□□□ 0.75
TRIM28-202ENST00000341753 RPL12P30050 165 aaKnown RBP19.75■□□□□ 0.75
TRIM28-202ENST00000341753 GABRA4P48169 554 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 DVL1P1P54792 670 aaPredicted RBP19.75■□□□□ 0.75
TRIM28-202ENST00000341753 ZNF319Q9P2F9 582 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 LSM5Q9Y4Y9 91 aaKnown RBP19.75■□□□□ 0.75
TRIM28-202ENST00000341753 DMDP11532 3685 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 UBE2CO00762 179 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 NQO2P16083 231 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 FCGR2CP31995 323 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 CDAP32320 146 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 SNU13P55769 128 aaKnown RBP19.75■□□□□ 0.75
TRIM28-202ENST00000341753 BIDP55957 195 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 OR2B8PP59922 312 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 TDGQ13569 410 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 PCK2Q16822 640 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 EIF5AL1Q6IS14 154 aaKnown RBP19.75■□□□□ 0.75
TRIM28-202ENST00000341753 MIOXQ9UGB7 285 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 POLR1DQ9Y2S0 133 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 ARG1P05089 322 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 CHRM2P08172 466 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 RD3LP0DJH9 198 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 FHITP49789 147 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 HSF1Q00613 529 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 TLE3Q04726 772 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 SHISA6Q6ZSJ9 500 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 BSCL2Q96G97 398 aaPredicted RBP19.75■□□□□ 0.75
TRIM28-202ENST00000341753 WWTR1Q9GZV5 400 aa19.75■□□□□ 0.75
TRIM28-202ENST00000341753 C7orf77A4D0Y5 90 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 K7EPK0 472 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 SCGNO76038 276 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 GSTP1P09211 210 aaKnown RBP19.74■□□□□ 0.75
TRIM28-202ENST00000341753 PET100P0DJ07 73 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 PTGER4P35408 488 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 ZNF616Q08AN1 781 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 IL15RAQ13261 267 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 NSDHLQ15738 373 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 TMEM268Q5VZI3 342 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 DEGS2Q6QHC5 323 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 Q7L0L9 218 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 PEG10Q86TG7 708 aaKnown RBP19.74■□□□□ 0.75
TRIM28-202ENST00000341753 FAM71E2Q8N5Q1 922 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 DNAJB11Q9UBS4 358 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 SRPK3Q9UPE1 567 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 CD38P28907 300 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 TMEM33P57088 247 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 THAP3Q8WTV1 239 aaPredicted RBP19.74■□□□□ 0.75
TRIM28-202ENST00000341753 EGLN1Q9GZT9 426 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 GPR84Q9NQS5 396 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 OSGIN2Q9Y236 505 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 TIMM10BQ9Y5J6 103 aa19.74■□□□□ 0.75
TRIM28-202ENST00000341753 A6NIZ1 184 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 S100A8P05109 93 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 GALNSP34059 522 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 RAP1BP61224 184 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 RAP1AP62834 184 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 MIDNQ504T8 468 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 GKN2Q86XP6 184 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 LURAP1LQ8IV03 231 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 RAB33BQ9H082 229 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 SPACA1Q9HBV2 294 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 PARP11Q9NR21 331 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 ASH2LQ9UBL3 628 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 CST4P01036 141 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 FASLGP48023 281 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 GSK3AP49840 483 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 ADAM5Q6NVV9 412 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 SYT13Q7L8C5 426 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 C1QL2Q7Z5L3 287 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 FAM24BQ8N5W8 94 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 OR51T1Q8NGJ9 327 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 KCNG3Q8TAE7 436 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 ERGIC1Q969X5 290 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 RGCCQ9H4X1 137 aa19.73■□□□□ 0.75
TRIM28-202ENST00000341753 C1QL1O75973 258 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 TSPAN15O95858 294 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 NME1P15531 152 aaKnown RBP19.72■□□□□ 0.75
TRIM28-202ENST00000341753 ACKR3P25106 362 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 OR1D5P58170 312 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 EIF5AP63241 154 aaKnown RBP19.72■□□□□ 0.75
TRIM28-202ENST00000341753 ZNF529Q6P280 563 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 LHFPL1Q86WI0 220 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 SPSB2Q99619 263 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 MESP1Q9BRJ9 268 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 CNTNAP3Q9BZ76 1288 aa19.72■□□□□ 0.75
TRIM28-202ENST00000341753 CUTCQ9NTM9 273 aa19.72■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms