RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 FETUBQ9UGM5 382 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 TIMM8BQ9Y5J9 83 aaPredicted RBP7.38□□□□□ -1.23
HMGB1-203ENST00000341423 RALGAPA1Q6GYQ0 2036 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF724A8MTY0 619 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 F6UZH7 168 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 PMS2P2O95744 297 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 ARAFP10398 606 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 CCL2P13500 99 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 FUT6P51993 359 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 SSX9Q7RTT3 188 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 ADGRG3Q86Y34 549 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 C17orf47Q8NEP4 570 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 OR4M1Q8NGD0 313 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 MYH8P13535 1937 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 A8MXE2 369 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 CYTIPO60759 359 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 RPL23AP62750 156 aaKnown RBP7.38□□□□□ -1.23
HMGB1-203ENST00000341423 SMAGPQ0VAQ4 97 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 ITLN2Q8WWU7 325 aaPredicted RBP7.38□□□□□ -1.23
HMGB1-203ENST00000341423 OIT3Q8WWZ8 545 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 DOK1Q99704 481 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 RGPD2P0DJD1 1756 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 FLNBO75369 2602 aaKnown RBP7.38□□□□□ -1.23
HMGB1-203ENST00000341423 LRRC3CA6NJW4 275 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 M0R1X1 148 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 CHST1O43916 411 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 GYPAP02724 150 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 KHDC1Q4VXA5 237 aaKnown RBP7.38□□□□□ -1.23
HMGB1-203ENST00000341423 CCDC190Q86UF4 302 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 BATF2Q8N1L9 274 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF300Q96RE9 604 aaPredicted RBP7.38□□□□□ -1.23
HMGB1-203ENST00000341423 CCL13Q99616 98 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 PRDM4Q9UKN5 801 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 OR6C68A6NDL8 312 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 METTL15A6NJ78 407 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF254O75437 659 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 GNAO1P09471 354 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 PSMB1P20618 241 aaKnown RBP7.38□□□□□ -1.23
HMGB1-203ENST00000341423 BDKRB2P30411 391 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 ERVK11-1P61568 191 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 SLC25A3Q00325 362 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF534Q76KX8 674 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 TMED4Q7Z7H5 227 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 LINC00052Q96N35 136 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 SLC22A13Q9Y226 551 aa7.38□□□□□ -1.23
HMGB1-203ENST00000341423 TECTAO75443 2155 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 TMEM210A6NLX4 147 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 OR5G3P0C626 314 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 CRYGSP22914 178 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 ETV4P43268 484 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 SPOCK1Q08629 439 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 SRSF6Q13247 344 aaKnown RBP7.37□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF239Q16600 458 aaKnown RBP7.37□□□□□ -1.23
HMGB1-203ENST00000341423 EMC4Q5J8M3 183 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 OR10K2Q6IF99 312 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 TMEM81Q6P7N7 255 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 AMIGO2Q86SJ2 522 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 CPOQ8IVL8 374 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 DMRTC2Q8IXT2 367 aaPredicted RBP7.37□□□□□ -1.23
HMGB1-203ENST00000341423 OR13C2Q8NGS9 318 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 OR2B2Q9GZK3 357 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 PTBP3O95758 552 aaKnown RBP7.37□□□□□ -1.23
HMGB1-203ENST00000341423 HNRNPCP07910 306 aaKnown RBP eCLIP7.37□□□□□ -1.234e-6■□□□□ 10.4
HMGB1-203ENST00000341423 PET100P0DJ07 73 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 CDK2P24941 298 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 LUMP51884 338 aaPredicted RBP7.37□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF133P52736 654 aaPredicted RBP7.37□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF117Q03924 483 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 COL19A1Q14993 1142 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 LAPTM4AQ15012 233 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 TMEM205Q6UW68 189 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 IGFL3Q6UXB1 125 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 SLC22A24Q8N4F4 322 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 WFIKKN1Q96NZ8 548 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 CLEC5AQ9NY25 188 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 NAV2Q8IVL1 2488 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 DIRAS1O95057 198 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 UCHL1P09936 223 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 CGB7P0DN87 165 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 GABRB3P28472 473 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 ATP5G2Q06055 141 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 PMS2P11Q13670 270 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 LRRC37A5PQ49AS3 106 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 TSPO2Q5TGU0 170 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 ZNF774Q6NX45 483 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 VWCEQ96DN2 955 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 RBM14Q96PK6 669 aaKnown RBP7.37□□□□□ -1.23
HMGB1-203ENST00000341423 SULT4A1Q9BR01 284 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 CACNA1FO60840 1977 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 PI4KAP42356 2102 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 E9PI62 339 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 H3BMQ9 156 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 PHF1O43189 567 aaPredicted RBP7.37□□□□□ -1.23
HMGB1-203ENST00000341423 TMPRSS11DO60235 418 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 KLK8O60259 260 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 SCAF4O95104 1147 aaKnown RBP7.37□□□□□ -1.23
HMGB1-203ENST00000341423 TIAF1O95411 115 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 PAPLNO95428 1278 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 GZMHP20718 246 aa7.37□□□□□ -1.23
HMGB1-203ENST00000341423 ACAA2P42765 397 aaKnown RBP7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms