RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 ZNF784Q8NCA9 323 aaPredicted RBP8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 OR2T27Q8NH04 317 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 DOK4Q8TEW6 326 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 TMEM230Q96A57 120 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 APH1AQ96BI3 265 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 RPUSD4Q96CM3 377 aaKnown RBP8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 LGR4Q9BXB1 951 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 DMRT3Q9NQL9 472 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 C14orf166Q9Y224 244 aaKnown RBP8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 KLHDC2Q9Y2U9 406 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 MRPS18BQ9Y676 258 aaKnown RBP8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 PRRT4C9JH25 899 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 M0QZQ0 153 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 PTGESO14684 152 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 P2RX6O15547 441 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 CDC40O60508 579 aaKnown RBP eCLIP8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 CTSVO60911 334 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 JTBO76095 146 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 C8orf89P0DMQ9 161 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 IRF1P10914 325 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 VIPR2P41587 438 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 BIDP55957 195 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 EXOSC7Q15024 291 aaKnown RBP8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 Q499Y3 187 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 ZNF596Q8TC21 504 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 PPP1R14AQ96A00 147 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 FAM46BQ96A09 425 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 CXorf40BQ96DE9 158 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 BPIFA2Q96DR5 249 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 PCGF1Q9BSM1 259 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 VAMP8Q9BV40 100 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 KLHL13Q9P2N7 655 aa8.57□□□□□ -1.04
PTCHD4-201ENST00000339488 CLDN34H7C241 214 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 GNG7O60262 68 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 TNFSF13O75888 250 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 BACE1P56817 501 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 HLA-DRB3P79483 266 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 ICAM4Q14773 271 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 RTP5Q14D33 572 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 PCK2Q16822 640 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 LINC01551Q86U37 167 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 MCEMP1Q8IX19 187 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 IL22RA1Q8N6P7 574 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 POC1AQ8NBT0 407 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 CHST4Q8NCG5 386 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 CADM4Q8NFZ8 388 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 OR5AR1Q8NGP9 310 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 OR2I1PQ8NGU4 316 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 OR5AK2Q8NH90 309 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 ZCCHC14Q8WYQ9 949 aaKnown RBP8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 RNF166Q96A37 237 aaPredicted RBP8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 SLC41A2Q96JW4 573 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 SGCZQ96LD1 299 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 TMEM56Q96MV1 263 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 WWTR1Q9GZV5 400 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 CLDND1Q9NY35 253 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 OSGIN2Q9Y236 505 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 COX11Q9Y6N1 276 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 TMEM56-RWDD3S4R434 201 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 BNIP3LO60238 219 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 ZIC2O95409 532 aaPredicted RBP8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 F11P03951 625 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 NBEAP1P0C6P0 100 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 HIST1H1CP16403 213 aaKnown RBP8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 UBE2G2P60604 165 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 CYCSP99999 105 aaKnown RBP8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 RAB11BQ15907 218 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 TMEM176BQ3YBM2 270 aaPredicted RBP8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 C10orf120Q5SQS8 335 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 GRINAQ7Z429 371 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 KLHDC8AQ8IYD2 350 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 TSEN15Q8WW01 171 aaKnown RBP8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 TSSK2Q96PF2 358 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 PRRT1Q99946 306 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 ZNF160Q9HCG1 818 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 FRRS1LQ9P0K9 344 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 TP73-AS1Q9UF72 201 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 FANCMQ8IYD8 2048 aa8.56□□□□□ -1.04
PTCHD4-201ENST00000339488 IGHV2-70DA0A0C4DH43 119 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 A0A1B0GU03 582 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 A0A1W2PNV4 684 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 WIPF3A6NGB9 483 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 HMGN2P05204 90 aaKnown RBP8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 CTSDP07339 412 aaPredicted RBP8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 CTXN2P0C2S0 81 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 SUCLG1P53597 346 aaKnown RBP8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 FAM3AP98173 230 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 DECR1Q16698 335 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 PLPP4Q5VZY2 271 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 Q6ZWC4 215 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 TNFRSF13CQ96RJ3 184 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 CMKLR1Q99788 373 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 KXD1Q9BQD3 176 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 HIPK2Q9H2X6 1198 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 CDH23Q9H251 3354 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 DOCK9Q9BZ29 2069 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 RANBP2P49792 3224 aaKnown RBP8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 TRIP12Q14669 1992 aaPredicted RBP8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 NPIPA5A0A0B4J1W7 369 aa8.55□□□□□ -1.04
PTCHD4-201ENST00000339488 SMIM35A0A1B0GVV1 85 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms