RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 KDM4BO94953 1096 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 IGKV3-15P01624 115 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 VSIG8P0DPA2 414 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 CBR1P16152 277 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 OR3A4PP47883 348 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 PRSS12P56730 875 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 MALLQ13021 153 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 UNC119Q13432 240 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 TBC1D28Q2M2D7 210 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 AWAT2Q6E213 333 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 MYPOPQ86VE0 399 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-202ENST00000338045 ZNF101Q8IZC7 436 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 MRPS28Q9Y2Q9 187 aaKnown RBP13.36□□□□□ -0.27
LIMS1-202ENST00000338045 hCG_2014768A0A024R1R8 64 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 ZNF816-ZNF321PA0A0X1KG74 233 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 A0A1W2PR80 420 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 SPNP16150 400 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 HOXC12P31275 282 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 OR10K2Q6IF99 312 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 ZNF474Q6S9Z5 364 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-202ENST00000338045 OR2W3Q7Z3T1 314 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 NRARPQ7Z6K4 114 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 SLC22A4Q9H015 551 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 ATG5Q9H1Y0 275 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 GPR173Q9NS66 373 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 GHRLQ9UBU3 117 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 MAP1BP46821 2468 aaKnown RBP13.35□□□□□ -0.27
LIMS1-202ENST00000338045 NRASP01111 189 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 CELA3BP08861 270 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 CD3GP09693 182 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 UBBP0CG47 229 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 PRKACBP22694 351 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 PTGFRP43088 359 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 IDH3GP51553 393 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-202ENST00000338045 PMPCAQ10713 525 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 CNN3Q15417 329 aaKnown RBP13.35□□□□□ -0.27
LIMS1-202ENST00000338045 DMRTC1Q5HYR2 192 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 GLIPR1L1Q6UWM5 242 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 BHLHA15Q7RTS1 189 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-202ENST00000338045 PNLDC1Q8NA58 520 aaKnown RBP13.35□□□□□ -0.27
LIMS1-202ENST00000338045 NPRL2Q8WTW4 380 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 TECTBQ96PL2 329 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 GPER1Q99527 375 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 PRORYQ9H606 182 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 AUNIPQ9H7T9 357 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 NEK6Q9HC98 313 aa13.35□□□□□ -0.27
LIMS1-202ENST00000338045 RBMX2Q9Y388 322 aaKnown RBP13.35□□□□□ -0.27
LIMS1-202ENST00000338045 OR5H1A6NKK0 313 aa13.34□□□□□ -0.27
LIMS1-202ENST00000338045 INPP1P49441 399 aa13.34□□□□□ -0.27
LIMS1-202ENST00000338045 KLRB1Q12918 225 aa13.34□□□□□ -0.27
LIMS1-202ENST00000338045 MRPL49Q13405 166 aaKnown RBP13.34□□□□□ -0.27
LIMS1-202ENST00000338045 RFPL4BQ6ZWI9 263 aa13.34□□□□□ -0.27
LIMS1-202ENST00000338045 MRPL21Q7Z2W9 205 aaKnown RBP13.34□□□□□ -0.27
LIMS1-202ENST00000338045 LILRB2Q8N423 598 aa13.34□□□□□ -0.27
LIMS1-202ENST00000338045 FAM169BQ8N8A8 192 aa13.34□□□□□ -0.27
LIMS1-202ENST00000338045 OR56B2PQ8NGI1 322 aa13.34□□□□□ -0.27
LIMS1-202ENST00000338045 OR5L1Q8NGL2 311 aa13.34□□□□□ -0.27
LIMS1-202ENST00000338045 PIGTQ969N2 578 aa13.34□□□□□ -0.27
LIMS1-202ENST00000338045 PHF21AQ96BD5 680 aa13.34□□□□□ -0.27
LIMS1-202ENST00000338045 ZC3HAV1LQ96H79 300 aaKnown RBP13.34□□□□□ -0.27
LIMS1-202ENST00000338045 POFUT1Q9H488 388 aa13.34□□□□□ -0.27
LIMS1-202ENST00000338045 KCNN3Q9UGI6 736 aa13.34□□□□□ -0.27
LIMS1-202ENST00000338045 TLN1Q9Y490 2541 aaKnown RBP13.34□□□□□ -0.27
LIMS1-202ENST00000338045 MSTNO14793 375 aa13.33□□□□□ -0.27
LIMS1-202ENST00000338045 LYRM1O43325 122 aa13.33□□□□□ -0.27
LIMS1-202ENST00000338045 IGLV1-44P01699 117 aa13.33□□□□□ -0.27
LIMS1-202ENST00000338045 ZP1P60852 638 aa13.33□□□□□ -0.27
LIMS1-202ENST00000338045 HLXQ14774 488 aaPredicted RBP13.33□□□□□ -0.27
LIMS1-202ENST00000338045 ZNF57Q68EA5 555 aaPredicted RBP13.33□□□□□ -0.27
LIMS1-202ENST00000338045 RAB12Q6IQ22 244 aa13.33□□□□□ -0.27
LIMS1-202ENST00000338045 OR52I2Q8NH67 350 aa13.33□□□□□ -0.27
LIMS1-202ENST00000338045 GCDHQ92947 438 aaPredicted RBP13.33□□□□□ -0.27
LIMS1-202ENST00000338045 CPNE2Q96FN4 548 aaPredicted RBP13.33□□□□□ -0.27
LIMS1-202ENST00000338045 RBFOX1Q9NWB1 397 aaKnown RBP13.33□□□□□ -0.27
LIMS1-202ENST00000338045 PTTG3PQ9NZH4 202 aa13.33□□□□□ -0.27
LIMS1-202ENST00000338045 MYEF2Q9P2K5 600 aaKnown RBP13.33□□□□□ -0.27
LIMS1-202ENST00000338045 TINAGQ9UJW2 476 aa13.33□□□□□ -0.27
LIMS1-202ENST00000338045 MYO7BQ6PIF6 2116 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 TRAV18A0A075B6X5 111 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 LOC105371267A0A1B0GV96 52 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 METTL21EPA6NDL7 271 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 RAB27BO00194 218 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 ORC5O43913 435 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 CST4P01036 141 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 FAM157BP0CG42 384 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 PSMB1P20618 241 aaKnown RBP13.33□□□□□ -0.28
LIMS1-202ENST00000338045 OPRM1P35372 400 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 GDNFP39905 211 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 RBPJQ06330 500 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 MZT2BQ6NZ67 158 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 LHFPL2Q6ZUX7 228 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 CSNK2A3Q8NEV1 391 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 KCNG3Q8TAE7 436 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 FCAMRQ8WWV6 532 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 FAM122AQ96E09 287 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 WBP1Q96G27 269 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 NEDD4LQ96PU5 975 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 NUDT16L1Q9BRJ7 211 aaKnown RBP13.33□□□□□ -0.28
LIMS1-202ENST00000338045 CDH20Q9HBT6 801 aa13.33□□□□□ -0.28
LIMS1-202ENST00000338045 AMDHD2Q9Y303 409 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms