RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 LRRC30A6NM36 301 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 E9PI62 339 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 IFNL4K9M1U5 179 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 IRF2P14316 349 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 PMELP40967 661 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 CCR9P51686 369 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 MRPL28Q13084 256 aaKnown RBP13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 TMEM249Q2WGJ8 235 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 CEP78Q5JTW2 689 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 ZBTB37Q5TC79 503 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 OR2G6Q5TZ20 316 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 OR11L1Q8NGX0 322 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 OR5P3Q8WZ94 311 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 ERGIC1Q969X5 290 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 HIST1H2AAQ96QV6 131 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 ZNF184Q99676 751 aaPredicted RBP13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 RTL8AQ9BWD3 113 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 PLEKHA1Q9HB21 404 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 NPTNQ9Y639 398 aa13.4□□□□□ -0.26
CCDC28A-201ENST00000332797 TMEM178BH3BS89 294 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 LMX1BO60663 402 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 PTBP3O95758 552 aaKnown RBP13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 LY6G6DO95868 133 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 IL2RGP31785 369 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 CSNK2BP67870 215 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 TMEM244Q5VVB8 128 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 PLCXD3Q63HM9 321 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 CLEC9AQ6UXN8 241 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 Q6ZSR3 168 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 KCTD8Q6ZWB6 473 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 MOB3CQ70IA8 216 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 WDR86Q86TI4 376 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 ZNF676Q8N7Q3 588 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 CLDND2Q8NHS1 167 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 Q8TCH9 128 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 HPSE2Q8WWQ2 592 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 HPS1Q92902 700 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 FKBP14Q9NWM8 211 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 C1orf123Q9NWV4 160 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 SCN3BQ9NY72 215 aa13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 TEP1Q99973 2627 aaKnown RBP13.39□□□□□ -0.27
CCDC28A-201ENST00000332797 hCG_1807616A0A1W2PRN6 198 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 OR4C45A6NMZ5 311 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 DHRS7CA6NNS2 312 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 PTGES3LE9PB15 166 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 ZNF205O95201 554 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 CCDC159P0C7I6 412 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 C21orf33P30042 268 aaPredicted RBP13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 THBS2P35442 1172 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 GTF2A1P52655 376 aaPredicted RBP13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 BTG1P62324 171 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 DMRTC1Q5HYR2 192 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 CLVS2Q5SYC1 327 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 KRT74Q7RTS7 529 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 C1orf87Q8N0U7 546 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 CCDC54Q8NEL0 328 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 OR1M1Q8NGA1 313 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 OR52N1Q8NH53 320 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 HAVCR2Q8TDQ0 301 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 RNF170Q96K19 258 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 FGF23Q9GZV9 251 aaPredicted RBP13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 GPR173Q9NS66 373 aa13.38□□□□□ -0.27
CCDC28A-201ENST00000332797 MYL12BO14950 172 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 NRASP01111 189 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 IGHV2-70P01814 119 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 ISG15P05161 165 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 ZNF12P17014 697 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 TGM4P49221 684 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 GPM6AP51674 278 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 CDH15P55291 814 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 ZNF181Q2M3W8 571 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 CEACAM21Q3KPI0 293 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 ZNF826PQ6ZT77 177 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 Q71RC1 249 aaPredicted RBP13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 BOLLQ8N9W6 283 aaKnown RBP13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 OR10AC1Q8NH08 325 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 GATAD2BQ8WXI9 593 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 MYDGFQ969H8 173 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 GAL3ST1Q99999 423 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 COMMD4Q9H0A8 199 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 RNF7Q9UBF6 113 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 PCDHGB5Q9Y5G0 923 aa13.37□□□□□ -0.27
CCDC28A-201ENST00000332797 TRBV2A0A0J9YWF9 115 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 TMEM210A6NLX4 147 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 TMEM212A6NML5 194 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 ZNF732B4DXR9 585 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 CDK1P06493 297 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 HEXAP06865 529 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 IGHV4-31P0DP07 118 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 HOXA4Q00056 320 aaPredicted RBP13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 KRTAP1-1Q07627 177 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 ZNF154Q13106 437 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 ZMYND11Q15326 602 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 FAM201AQ5SY85 155 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 TMEM42Q69YG0 159 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 XAF1Q6GPH4 301 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 RPL22L1Q6P5R6 122 aaKnown RBP13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 OR5AK2Q8NH90 309 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 SGCDQ92629 289 aa13.36□□□□□ -0.27
CCDC28A-201ENST00000332797 PDCD1LG2Q9BQ51 273 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms