RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 RNF126Q9BV68 326 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 PIGMQ9H3S5 423 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 RAB18Q9NP72 206 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 TAS2R3Q9NYW6 316 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 WNT16Q9UBV4 365 aa11.25□□□□□ -0.61
LINC00540-203ENST00000631321 C5orf51A6NDU8 294 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 FGF16O43320 207 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 NAT2P11245 290 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 LYL1P12980 280 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 SFTPDP35247 375 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 NAAAQ02083 359 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 C10orf128Q5T292 105 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 LYZL4Q96KX0 146 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 CCDC74BQ96LY2 380 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 ZNF416Q9BWM5 594 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 OR10A2Q9H208 303 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 PHF3Q92576 2039 aaKnown RBP11.24□□□□□ -0.61
LINC00540-203ENST00000631321 CEP192Q8TEP8 1941 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 A0A0U1RQV5 110 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 A0A1W2PP11 408 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 E9PLN8 166 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 TP53I11O14683 189 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 CRTAPO75718 401 aaPredicted RBP11.24□□□□□ -0.61
LINC00540-203ENST00000631321 CTRB1P17538 263 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 THBS4P35443 961 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 CTRB2Q6GPI1 263 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 ELP2Q6IA86 826 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 ATRAIDQ6UW56 229 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 PPP1R3BQ86XI6 285 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 TMEM54Q969K7 222 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 CLDN23Q96B33 292 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 C12orf4Q9NQ89 552 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 OSGIN2Q9Y236 505 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 CSAG2Q9Y5P2 127 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 FLVCR1Q9Y5Y0 555 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 V9GYS6 101 aa11.24□□□□□ -0.61
LINC00540-203ENST00000631321 LOC102723996A0A087X1L8 192 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 RAB19A4D1S5 217 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 TPD52L2O43399 206 aaKnown RBP11.23□□□□□ -0.61
LINC00540-203ENST00000631321 CA11O75493 328 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 APOC3P02656 99 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 MSR1P21757 451 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 CLDN17P56750 224 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 HIST1H3AP68431 136 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 PCOLCEQ15113 449 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 HIST2H3PS2Q5TEC6 136 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 CLEC18BQ6UXF7 455 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 HIST2H3AQ71DI3 136 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 CCDC36Q8IYA8 594 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 SLC30A7Q8NEW0 376 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 BPIFCQ8NFQ6 507 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 OR5H2Q8NGV7 314 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 RHBDD1Q8TEB9 315 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 MARC2Q969Z3 335 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 NTNG2Q96CW9 530 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 RTBDNQ9BSG5 229 aaPredicted RBP11.23□□□□□ -0.61
LINC00540-203ENST00000631321 TMEM100Q9NV29 134 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 C5orf63A6NC05 138 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 MPTX1A8MV57 137 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 H0YIZ8 118 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 PGAM2P15259 253 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 PTGFRP43088 359 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 NPY4RP50391 375 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 SUPT4H1P63272 117 aaKnown RBP11.23□□□□□ -0.61
LINC00540-203ENST00000631321 ENDOGQ14249 297 aaKnown RBP11.23□□□□□ -0.61
LINC00540-203ENST00000631321 KISS1Q15726 138 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 Q7L0L9 218 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 SLC16A14Q7RTX9 510 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 PNLDC1Q8NA58 520 aaKnown RBP11.23□□□□□ -0.61
LINC00540-203ENST00000631321 OR13G1Q8NGZ3 307 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 PGAM5Q96HS1 289 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 GPER1Q99527 375 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 TM2D1Q9BX74 207 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 WDR54Q9H977 334 aa11.23□□□□□ -0.61
LINC00540-203ENST00000631321 C13orf42A0A1B0GVH6 325 aa11.22□□□□□ -0.61
LINC00540-203ENST00000631321 DNASE2O00115 360 aaPredicted RBP11.22□□□□□ -0.61
LINC00540-203ENST00000631321 AMY2BP19961 511 aa11.22□□□□□ -0.61
LINC00540-203ENST00000631321 CSNK1A1P48729 337 aa11.22□□□□□ -0.61
LINC00540-203ENST00000631321 TAS2R46P59540 309 aa11.22□□□□□ -0.61
LINC00540-203ENST00000631321 AADACL3Q5VUY0 350 aa11.22□□□□□ -0.61
LINC00540-203ENST00000631321 CCDC54Q8NEL0 328 aa11.22□□□□□ -0.61
LINC00540-203ENST00000631321 GJC3Q8NFK1 279 aa11.22□□□□□ -0.61
LINC00540-203ENST00000631321 DCUN1D4Q92564 292 aa11.22□□□□□ -0.61
LINC00540-203ENST00000631321 NABP1Q96AH0 204 aa11.22□□□□□ -0.61
LINC00540-203ENST00000631321 NELFAQ9H3P2 528 aa11.22□□□□□ -0.61
LINC00540-203ENST00000631321 CYTL1Q9NRR1 136 aa11.22□□□□□ -0.61
LINC00540-203ENST00000631321 PCDHB10Q9UN67 800 aa11.22□□□□□ -0.61
LINC00540-203ENST00000631321 RALGAPA1Q6GYQ0 2036 aa11.22□□□□□ -0.61
LINC00540-203ENST00000631321 TOR1AO14656 332 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 SIGLEC6O43699 453 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 TPT1P13693 172 aaKnown RBP11.21□□□□□ -0.61
LINC00540-203ENST00000631321 OTX1P32242 354 aaPredicted RBP11.21□□□□□ -0.61
LINC00540-203ENST00000631321 CXCL12P48061 93 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 SGCAQ16586 387 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 GFOD2Q3B7J2 385 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 FAM122CQ6P4D5 195 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 C1QL2Q7Z5L3 287 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 ARMC10Q8N2F6 343 aa11.21□□□□□ -0.61
LINC00540-203ENST00000631321 ZSCAN4Q8NAM6 433 aaPredicted RBP11.21□□□□□ -0.61
LINC00540-203ENST00000631321 OR51T1Q8NGJ9 327 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms