RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 FADS2O95864 444 aaKnown RBP17.45■□□□□ 0.38
CLN3-240ENST00000631023 CST4P01036 141 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 TTRP02766 147 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 CDH15P55291 814 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 BTG1P62324 171 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 ZNF85Q03923 595 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 ELMOD2Q8IZ81 293 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 Q8TCH9 128 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 PPP1R14AQ96A00 147 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 LGALS12Q96DT0 336 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 SOX7Q9BT81 388 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 UFSP2Q9NUQ7 469 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 GNG8Q9UK08 70 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 KCNS2Q9ULS6 477 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 PCDHB10Q9UN67 800 aa17.45■□□□□ 0.38
CLN3-240ENST00000631023 ARHGAP32A7KAX9 2087 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 LMX1BO60663 402 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 IGHV2-70P01814 119 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 ACKR3P25106 362 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 RAB40BQ12829 278 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 IL18R1Q13478 541 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 TMEM155Q4W5P6 130 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 KLHL22Q53GT1 634 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 PRAMEF6Q5VXH4 476 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 THAP5Q7Z6K1 395 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 LRRC28Q86X40 367 aaPredicted RBP17.44■□□□□ 0.38
CLN3-240ENST00000631023 MUC20Q8N307 709 aaPredicted RBP17.44■□□□□ 0.38
CLN3-240ENST00000631023 KLHL36Q8N4N3 616 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 SPICQ8N5J4 248 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 SEMA6DQ8NFY4 1073 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 DVL3Q92997 716 aaPredicted RBP17.44■□□□□ 0.38
CLN3-240ENST00000631023 FAM71F1Q96KD3 344 aaPredicted RBP17.44■□□□□ 0.38
CLN3-240ENST00000631023 MICU1Q9BPX6 476 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 AMBNQ9NP70 447 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 UBAP1Q9NZ09 502 aa17.44■□□□□ 0.38
CLN3-240ENST00000631023 NKX1-2Q9UD57 310 aaPredicted RBP17.44■□□□□ 0.38
CLN3-240ENST00000631023 ZNF816-ZNF321PA0A0X1KG74 233 aa17.43■□□□□ 0.38
CLN3-240ENST00000631023 CYB5R3P00387 301 aaPredicted RBP17.43■□□□□ 0.38
CLN3-240ENST00000631023 IGLV3-1P01715 115 aa17.43■□□□□ 0.38
CLN3-240ENST00000631023 GRPP07492 148 aa17.43■□□□□ 0.38
CLN3-240ENST00000631023 MDH2P40926 338 aaKnown RBP17.43■□□□□ 0.38
CLN3-240ENST00000631023 ACTA2P62736 377 aa17.43■□□□□ 0.38
CLN3-240ENST00000631023 ACTG2P63267 376 aa17.43■□□□□ 0.38
CLN3-240ENST00000631023 ADARB1P78563 741 aaKnown RBP17.43■□□□□ 0.38
CLN3-240ENST00000631023 RIPPLY1Q0D2K3 151 aa17.43■□□□□ 0.38
CLN3-240ENST00000631023 MPPED2Q15777 294 aa17.43■□□□□ 0.38
CLN3-240ENST00000631023 TP53I3Q53FA7 332 aa17.43■□□□□ 0.38
CLN3-240ENST00000631023 APH1BQ8WW43 257 aa17.43■□□□□ 0.38
CLN3-240ENST00000631023 PIGCQ92535 297 aa17.43■□□□□ 0.38
CLN3-240ENST00000631023 HIST1H2AAQ96QV6 131 aa17.43■□□□□ 0.38
CLN3-240ENST00000631023 ADI1Q9BV57 179 aa17.43■□□□□ 0.38
CLN3-240ENST00000631023 RNPEPL1Q9HAU8 725 aa17.43■□□□□ 0.38
CLN3-240ENST00000631023 A6NLC8 198 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 ZNF850A8MQ14 1090 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 H0YAE9 185 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 FAM20BO75063 409 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 DHRS3O75911 302 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 CLIC3O95833 236 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 IGHV2-5P01817 119 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 CAPGP40121 348 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 PMELP40967 661 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 PRDX4Q13162 271 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 ZMYND11Q15326 602 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 CDONQ4KMG0 1287 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 ZBTB37Q5TC79 503 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 RORBQ92753 470 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 RTL8AQ9BWD3 113 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 INPP5EQ9NRR6 644 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 MRPS18AQ9NVS2 196 aaKnown RBP17.42■□□□□ 0.38
CLN3-240ENST00000631023 TMEM160Q9NX00 188 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 RNF7Q9UBF6 113 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 HSPE1-MOB4S4R3N1 261 aa17.42■□□□□ 0.38
CLN3-240ENST00000631023 PPIAL4EA0A075B759 164 aa17.41■□□□□ 0.38
CLN3-240ENST00000631023 PPIAL4DF5H284 164 aa17.41■□□□□ 0.38
CLN3-240ENST00000631023 WBP4O75554 376 aaKnown RBP17.41■□□□□ 0.38
CLN3-240ENST00000631023 FSTL3O95633 263 aa17.41■□□□□ 0.38
CLN3-240ENST00000631023 PPIAL4FP0DN26 164 aa17.41■□□□□ 0.38
CLN3-240ENST00000631023 HNRNPA0Q13151 305 aaKnown RBP17.41■□□□□ 0.38
CLN3-240ENST00000631023 KRT74Q7RTS7 529 aa17.41■□□□□ 0.38
CLN3-240ENST00000631023 CATSPERDQ86XM0 798 aa17.41■□□□□ 0.38
CLN3-240ENST00000631023 EGFL6Q8IUX8 553 aa17.41■□□□□ 0.38
CLN3-240ENST00000631023 ZDHHC23Q8IYP9 409 aa17.41■□□□□ 0.38
CLN3-240ENST00000631023 ITPKCQ96DU7 683 aa17.41■□□□□ 0.38
CLN3-240ENST00000631023 ACOXLQ9NUZ1 547 aa17.41■□□□□ 0.38
CLN3-240ENST00000631023 ENPP5Q9UJA9 477 aa17.41■□□□□ 0.38
CLN3-240ENST00000631023 PIGLQ9Y2B2 252 aa17.41■□□□□ 0.38
CLN3-240ENST00000631023 PPIAL4AQ9Y536 164 aa17.41■□□□□ 0.38
CLN3-240ENST00000631023 FAM157AC9JC47 383 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 MSMBP08118 114 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 PCMT1P22061 227 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 RBMXP38159 391 aaKnown RBP17.4■□□□□ 0.38
CLN3-240ENST00000631023 ISL1P61371 349 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 GALEQ14376 348 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 DOK3Q7L591 496 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 OR51F2Q8NH61 342 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 C1orf123Q9NWV4 160 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 SLC22A13Q9Y226 551 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 MYRFQ9Y2G1 1151 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 NF1P21359 2839 aa17.4■□□□□ 0.38
CLN3-240ENST00000631023 hCG_1807616A0A1W2PRN6 198 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms