RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 RAB9AP51151 201 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 OR12D2P58182 307 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 FMODQ06828 376 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 SELENBP1Q13228 472 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 MRPL23Q16540 153 aaKnown RBP0.66□□□□□ -2.3
SCN1A-208ENST00000625916 ZNF181Q2M3W8 571 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 PDZD11Q5EBL8 140 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 GCSAMLQ5JQS6 135 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 LDLRAD2Q5SZI1 272 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 FAM104BQ5XKR9 115 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 FBXO32Q969P5 355 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 SGTBQ96EQ0 304 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 CRACR2AQ9BSW2 395 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 EMC6Q9BV81 110 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 SFXN3Q9BWM7 321 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 PKIBQ9C010 78 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 PLEKHF2Q9H8W4 249 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 BEX1Q9HBH7 125 aa0.66□□□□□ -2.3
SCN1A-208ENST00000625916 LOC102724200A0A096LPH7 203 aaPredicted RBP0.65□□□□□ -2.31
SCN1A-208ENST00000625916 TRBV9A0A0B4J1U6 114 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 HEATR9A2RTY3 570 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 IZUMO1RA6ND01 250 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 M0R3G1 203 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 NME4O00746 187 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 SLC9A3R1O14745 358 aaPredicted RBP0.65□□□□□ -2.31
SCN1A-208ENST00000625916 LSM1O15116 133 aaKnown RBP0.65□□□□□ -2.31
SCN1A-208ENST00000625916 HBE1P02100 147 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 UQCRFS1P1P0C7P4 283 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 MYL2P10916 166 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 RAB4AP20338 218 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 PPICP45877 212 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 ATP5IP56385 69 aaPredicted RBP0.65□□□□□ -2.31
SCN1A-208ENST00000625916 DEFB103AP81534 67 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 KDSRQ06136 332 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 C2orf54Q08AI8 447 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 CUL2Q13617 745 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 C6orf99Q4VX62 202 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 FA2HQ7L5A8 372 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 HORMAD1Q86X24 394 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 EIF4E3Q8N5X7 224 aaKnown RBP0.65□□□□□ -2.31
SCN1A-208ENST00000625916 OR4D6Q8NGJ1 314 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 OR13C2Q8NGS9 318 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 OR8K3Q8NH51 312 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 RSPH1Q8WYR4 309 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 YIPF6Q96EC8 236 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 MS4A8Q9BY19 250 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 TBL1XR1Q9BZK7 514 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 NEUROG2Q9H2A3 272 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 METTL7AQ9H8H3 244 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 TMEM165Q9HC07 324 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 AGPAT4Q9NRZ5 378 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 STX18Q9P2W9 335 aaKnown RBP0.65□□□□□ -2.31
SCN1A-208ENST00000625916 PITPNC1Q9UKF7 332 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 CES1P1Q9UKY3 287 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 CAB39Q9Y376 341 aaPredicted RBP0.65□□□□□ -2.31
SCN1A-208ENST00000625916 ZNF337Q9Y3M9 751 aa0.65□□□□□ -2.31
SCN1A-208ENST00000625916 CACNA1DQ01668 2161 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 KIAA1671Q9BY89 1806 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 GPR98Q8WXG9 6306 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 A0A0A6YYD5 115 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 CCL15-CCL14A0A0B4J2E2 113 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 IGKV1-6A0A0C4DH72 117 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 C9JVG2 144 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 H3BQ85 93 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 PSCAO43653 123 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 HUS1O60921 280 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 IGKV1-39P01597 117 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 TRBV12-3P01733 135 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 IGKV1D-39P04432 117 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 OR5AC1P0C628 307 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 BCKDHBP21953 392 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 MYCNOSP40205 109 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 LGALS7P47929 136 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 RGS6P49758 472 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 ERFP50548 548 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 FABP6P51161 128 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 FOXA1P55317 472 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 ACTR3P61158 418 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 MAPRE2Q15555 327 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 CCL15Q16663 113 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 HADHQ16836 314 aaKnown RBP0.64□□□□□ -2.31
SCN1A-208ENST00000625916 KRTAP25-1Q3LHN0 102 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 LGALSLQ3ZCW2 172 aaPredicted RBP0.64□□□□□ -2.31
SCN1A-208ENST00000625916 XKR7Q5GH72 579 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 MRPL2Q5T653 305 aaKnown RBP0.64□□□□□ -2.31
SCN1A-208ENST00000625916 HHATQ5VTY9 493 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 PDPNQ86YL7 162 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 LRRC8AQ8IWT6 810 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 RNF10Q8N5U6 811 aaKnown RBP0.64□□□□□ -2.31
SCN1A-208ENST00000625916 OR10W1Q8NGF6 305 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 OR9G4Q8NGQ1 327 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 S100PBPQ96BU1 408 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 SNF8Q96H20 258 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 PRRC1Q96M27 445 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 ZNF75AQ96N20 296 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 ALS2CR12Q96Q35 445 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 TEAD3Q99594 435 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 UQCC2Q9BRT2 126 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 ZYG11BQ9C0D3 744 aa0.64□□□□□ -2.31
SCN1A-208ENST00000625916 ACTR3CQ9C0K3 210 aaPredicted RBP0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms