RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 PDCD1LG2Q9BQ51 273 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 COMMD4Q9H0A8 199 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 TPK1Q9H3S4 243 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 ISYNA1Q9NPH2 558 aa16.78■□□□□ 0.28
UPF3A-211ENST00000618700 BEX4Q9NWD9 120 aaPredicted RBP16.78■□□□□ 0.28
UPF3A-211ENST00000618700 MLNRO43193 412 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 SYT7O43581 403 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 IGHV1-46P01743 117 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 CD1AP06126 327 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 MED22Q15528 200 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 ZBTB37Q5TC79 503 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 ZNF367Q7RTV3 350 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 SEMA6DQ8NFY4 1073 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 OR51A4Q8NGJ6 313 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 OR13G1Q8NGZ3 307 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 RGP1Q92546 391 aaPredicted RBP16.77■□□□□ 0.28
UPF3A-211ENST00000618700 NR1H4Q96RI1 486 aaPredicted RBP16.77■□□□□ 0.28
UPF3A-211ENST00000618700 GSX2Q9BZM3 304 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 TMEM100Q9NV29 134 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 NKIRAS2Q9NYR9 191 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 ZDHHC8Q9ULC8 765 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 HHLA2Q9UM44 414 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 RHBDD3Q9Y3P4 386 aa16.77■□□□□ 0.28
UPF3A-211ENST00000618700 ZNF816-ZNF321PA0A0X1KG74 233 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 SPRY3O43610 288 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 PLPP2O43688 288 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 CST4P01036 141 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 CD55P08174 381 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 RPSAP08865 295 aaKnown RBP16.76■□□□□ 0.27
UPF3A-211ENST00000618700 ZNF12P17014 697 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 SLC3A1Q07837 685 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 DEFB113Q30KQ7 82 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 FAM209AQ5JX71 171 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 FTMTQ8N4E7 242 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 ELMOD3Q96FG2 381 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 DIRC2Q96SL1 478 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 VRK1Q99986 396 aaPredicted RBP16.76■□□□□ 0.27
UPF3A-211ENST00000618700 SLC22A4Q9H015 551 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 PIGLQ9Y2B2 252 aa16.76■□□□□ 0.27
UPF3A-211ENST00000618700 TEX15Q9BXT5 2789 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 ANKRD30BLA7E2S9 258 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 H0YL77 283 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 H3BSH0 61 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 NCR1O76036 304 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 FAHP16930 419 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 CELP19835 753 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 CA6P23280 308 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 MAGEB1P43366 347 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 PTH2RP49190 550 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 RIPPLY1Q0D2K3 151 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 MLLT11Q13015 90 aaPredicted RBP16.75■□□□□ 0.27
UPF3A-211ENST00000618700 PCGF3Q3KNV8 242 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 UBE2UQ5VVX9 321 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 TMEM42Q69YG0 159 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 OR10AD1Q8NGE0 317 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 UBASH3BQ8TF42 649 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 FCGR1BQ92637 280 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 GHSRQ92847 366 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 C10orf35Q96D05 121 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 OPALINQ96PE5 141 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 ADAT1Q9BUB4 502 aaKnown RBP16.75■□□□□ 0.27
UPF3A-211ENST00000618700 PAPOLGQ9BWT3 736 aaKnown RBP16.75■□□□□ 0.27
UPF3A-211ENST00000618700 RAB1BQ9H0U4 201 aa16.75■□□□□ 0.27
UPF3A-211ENST00000618700 NOP16Q9Y3C1 178 aaKnown RBP16.75■□□□□ 0.27
UPF3A-211ENST00000618700 PNMA8CA0A1B0GUJ8 204 aa16.74■□□□□ 0.27
UPF3A-211ENST00000618700 GMDSO60547 372 aa16.74■□□□□ 0.27
UPF3A-211ENST00000618700 LMX1BO60663 402 aa16.74■□□□□ 0.27
UPF3A-211ENST00000618700 NDUFS7O75251 213 aa16.74■□□□□ 0.27
UPF3A-211ENST00000618700 TPBGQ13641 420 aa16.74■□□□□ 0.27
UPF3A-211ENST00000618700 LINC01559Q495D7 138 aa16.74■□□□□ 0.27
UPF3A-211ENST00000618700 TSPAN14Q8NG11 270 aa16.74■□□□□ 0.27
UPF3A-211ENST00000618700 OR2Z1Q8NG97 314 aa16.74■□□□□ 0.27
UPF3A-211ENST00000618700 TRMT61AQ96FX7 289 aaKnown RBP16.74■□□□□ 0.27
UPF3A-211ENST00000618700 MGLLQ99685 303 aa16.74■□□□□ 0.27
UPF3A-211ENST00000618700 PPP1R3EQ9H7J1 279 aa16.74■□□□□ 0.27
UPF3A-211ENST00000618700 ENPP5Q9UJA9 477 aa16.74■□□□□ 0.27
UPF3A-211ENST00000618700 ZNF281Q9Y2X9 895 aa16.74■□□□□ 0.27
UPF3A-211ENST00000618700 MPC1Q9Y5U8 109 aa16.74■□□□□ 0.27
UPF3A-211ENST00000618700 A0A087WXM4 84 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 TRIM64CA6NLI5 447 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 IGHV4-39P01824 125 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 HLA-DPB1P04440 258 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 ERCC1P07992 297 aaPredicted RBP16.73■□□□□ 0.27
UPF3A-211ENST00000618700 HSMCR30P0CW71 290 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 EFNA4P52798 201 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 RPS11P62280 158 aaKnown RBP eCLIP16.73■□□□□ 0.27
UPF3A-211ENST00000618700 PRDX4Q13162 271 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 GPR50Q13585 617 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 OR8G1Q15617 311 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 LRRC75A-AS1Q8N1F1 130 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 GPR148Q8TDV2 347 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 NEU4Q8WWR8 484 aaPredicted RBP16.73■□□□□ 0.27
UPF3A-211ENST00000618700 UFD1Q92890 307 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 DVL3Q92997 716 aaPredicted RBP16.73■□□□□ 0.27
UPF3A-211ENST00000618700 PLEKHA1Q9HB21 404 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 ABCB9Q9NP78 766 aa16.73■□□□□ 0.27
UPF3A-211ENST00000618700 CCDC168Q8NDH2 2452 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 TRBV5-5A0A0J9YX44 114 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 F5H5P2 479 aa16.72■□□□□ 0.27
UPF3A-211ENST00000618700 HPXP02790 462 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms