RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 CFPP27918 469 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 CD80P33681 288 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 POU4F2Q12837 409 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 SNCBQ16143 134 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 ZNF404Q494X3 552 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 ESCO2Q56NI9 601 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 LIPNQ5VXI9 398 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 SSX6Q7RTT6 188 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.39□□□□□ -0.27
BRCA1-228ENST00000618469 EME1Q96AY2 570 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 HRASLS5Q96KN8 279 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 MBOAT4Q96T53 435 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 APOL4Q9BPW4 351 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 TMEM246Q9BRR3 403 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 PBOV1Q9GZY1 135 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 PPP1R3EQ9H7J1 279 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 TMEM165Q9HC07 324 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 RNF7Q9UBF6 113 aa13.39□□□□□ -0.27
BRCA1-228ENST00000618469 ANXA2P2A6NMY6 339 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 LOC110117498-PIK3R3F6TDL0 507 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 BAG2O95816 211 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 DCTDP32321 178 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 THBS2P35442 1172 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 ATP6V1E1P36543 226 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 EGR3Q06889 387 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 PRDX4Q13162 271 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 C12orf54Q6X4T0 127 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 ZNF826PQ6ZT77 177 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 WDR86Q86TI4 376 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 PLPP7Q8NBV4 271 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 OR10H4Q8NGA5 316 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 RFKQ969G6 155 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 FAM71F1Q96KD3 344 aaPredicted RBP13.38□□□□□ -0.27
BRCA1-228ENST00000618469 TMPRSS13Q9BYE2 586 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 MOB1AQ9H8S9 216 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 NUFIP1Q9UHK0 495 aaKnown RBP13.38□□□□□ -0.27
BRCA1-228ENST00000618469 MRM2Q9UI43 246 aaKnown RBP13.38□□□□□ -0.27
BRCA1-228ENST00000618469 LRCH1Q9Y2L9 728 aa13.38□□□□□ -0.27
BRCA1-228ENST00000618469 LOC105371242A0A075B767 164 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 A0A0U1RQV5 110 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 ACOD1A6NK06 481 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 ZNF850A8MQ14 1090 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 A8MXK9 166 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 C3orf80F5H4A9 247 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 KRT8P05787 483 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 CSNK2BP67870 215 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 IL5RAQ01344 420 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 ZNF154Q13106 437 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 BCL2L15Q5TBC7 163 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 NLRC3Q7RTR2 1065 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 DEFB108BQ8NET1 73 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 OR1M1Q8NGA1 313 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 OR8B3Q8NGG8 313 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 OR51E1Q8TCB6 317 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 UBE2FQ969M7 185 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 ITPKCQ96DU7 683 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 NEIL1Q96FI4 390 aaPredicted RBP13.37□□□□□ -0.27
BRCA1-228ENST00000618469 OR8B2Q96RD0 313 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 MICU1Q9BPX6 476 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 RTL8AQ9BWD3 113 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 SSBP3Q9BWW4 388 aaPredicted RBP13.37□□□□□ -0.27
BRCA1-228ENST00000618469 METTL17Q9H7H0 456 aaPredicted RBP13.37□□□□□ -0.27
BRCA1-228ENST00000618469 ABCB9Q9NP78 766 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 GPR84Q9NQS5 396 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 MIOXQ9UGB7 285 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 OR5V1Q9UGF6 321 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 GMPPBQ9Y5P6 360 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 MPC1Q9Y5U8 109 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 R4GMQ9 66 aa13.37□□□□□ -0.27
BRCA1-228ENST00000618469 ARHGAP32A7KAX9 2087 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 A0A1W2PQL4 384 aaPredicted RBP13.36□□□□□ -0.27
BRCA1-228ENST00000618469 J3QLI3 93 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 LGALS8O00214 317 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 ENTPD6O75354 484 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 SRSF10O75494 262 aaKnown RBP13.36□□□□□ -0.27
BRCA1-228ENST00000618469 RPP14O95059 124 aaKnown RBP13.36□□□□□ -0.27
BRCA1-228ENST00000618469 FSTL3O95633 263 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 CST4P01036 141 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 AVPP01185 164 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 TTRP02766 147 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 EGR1P18146 543 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 ADRA2CP18825 462 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 GATA3P23771 443 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 MAP2K3P46734 347 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 GNB2P62879 340 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 TMED1Q13445 227 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 ZSCAN26Q16670 478 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 SFRP4Q6FHJ7 346 aaPredicted RBP13.36□□□□□ -0.27
BRCA1-228ENST00000618469 DCDC5Q6ZRR9 648 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 ZBTB49Q6ZSB9 765 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 ZDHHC23Q8IYP9 409 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 YIPF7Q8N8F6 280 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 LRRC29Q8WV35 223 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 TRUB1Q8WWH5 349 aaKnown RBP13.36□□□□□ -0.27
BRCA1-228ENST00000618469 HPSE2Q8WWQ2 592 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 PIGCQ92535 297 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 PPP1R14AQ96A00 147 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 SLC29A1Q99808 456 aa13.36□□□□□ -0.27
BRCA1-228ENST00000618469 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.36□□□□□ -0.27
BRCA1-228ENST00000618469 ZNF816-ZNF321PA0A0X1KG74 233 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms