RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TYW3Q6IPR3 259 aaKnown RBP3.47□□□□□ -1.85
LINC00540-201ENST00000611481 RNASEKQ6P5S7 137 aaKnown RBP3.47□□□□□ -1.85
LINC00540-201ENST00000611481 AGTRAPQ6RW13 159 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 DPY19L2P2Q6ZN68 376 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 FRRS1Q6ZNA5 592 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 MBOAT1Q6ZNC8 495 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 VTCN1Q7Z7D3 282 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 SBSPONQ8IVN8 264 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 SLC38A6Q8IZM9 456 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 ST13P4Q8IZP2 240 aaPredicted RBP3.47□□□□□ -1.85
LINC00540-201ENST00000611481 RNF113BQ8IZP6 322 aaKnown RBP3.47□□□□□ -1.85
LINC00540-201ENST00000611481 SYCE1Q8N0S2 351 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 CCDC197Q8NCU1 140 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 OR2M3Q8NG83 312 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 OR4C15Q8NGM1 316 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 OR13C5Q8NGS8 318 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 PHLDA1Q8WV24 401 aaPredicted RBP3.47□□□□□ -1.85
LINC00540-201ENST00000611481 CIDECQ96AQ7 238 aaPredicted RBP3.47□□□□□ -1.85
LINC00540-201ENST00000611481 ARL5BQ96KC2 179 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 DUX3Q96PT4 197 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 ATOH8Q96SQ7 321 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 MAPKAP1Q9BPZ7 522 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 CENPKQ9BS16 269 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 URM1Q9BTM9 101 aaKnown RBP3.47□□□□□ -1.85
LINC00540-201ENST00000611481 GBA3Q9H227 469 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 EDA2RQ9HAV5 297 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 TMEM165Q9HC07 324 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 MRPL47Q9HD33 250 aaKnown RBP3.47□□□□□ -1.85
LINC00540-201ENST00000611481 MED17Q9NVC6 651 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 TECRQ9NZ01 308 aaKnown RBP3.47□□□□□ -1.85
LINC00540-201ENST00000611481 ZNF319Q9P2F9 582 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 GALPQ9UBC7 116 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 SLC2A6Q9UGQ3 507 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 EMCNQ9ULC0 261 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 GAB2Q9UQC2 676 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 AMDHD2Q9Y303 409 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 WIPI2Q9Y4P8 454 aa3.47□□□□□ -1.85
LINC00540-201ENST00000611481 KMT2AQ03164 3969 aa3.46□□□□□ -1.85
LINC00540-201ENST00000611481 IGHV3-15A0A0B4J1V0 119 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 IGHV1-18A0A0C4DH31 117 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 ISPDA4D126 451 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 BTNL10A8MVZ5 291 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 M0R233 179 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 TSPAN2O60636 221 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 DUS4LO95620 317 aaKnown RBP3.46□□□□□ -1.86
LINC00540-201ENST00000611481 TBX6O95947 436 aaPredicted RBP3.46□□□□□ -1.86
LINC00540-201ENST00000611481 IGHMP01871 453 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 APOA1P02647 267 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 MT-ND2P03891 347 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 GSTA1P08263 222 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 FAM106CPP0CH98 169 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 STAG3L2P0CL84 134 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 CD28P10747 220 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 KDELR1P24390 212 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 OTX1P32242 354 aaPredicted RBP3.46□□□□□ -1.86
LINC00540-201ENST00000611481 CD80P33681 288 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 ISL1P61371 349 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 MRPS11P82912 194 aaKnown RBP3.46□□□□□ -1.86
LINC00540-201ENST00000611481 PRPSAP1Q14558 356 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 GABRA6Q16445 453 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 PDSS1Q5T2R2 415 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 GPR157Q5UAW9 335 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 FBXW9Q5XUX1 488 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 REP15Q6BDI9 236 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 OR4F3Q6IEY1 312 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 OR7E24Q6IFN5 339 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 PPP1R2P3Q6NXS1 205 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 TMEM107Q6UX40 140 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 RFPL4BQ6ZWI9 263 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 ASRGL1Q7L266 308 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 FCRLAQ7L513 359 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 SSX9Q7RTT3 188 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 NDUFA11Q86Y39 141 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 CCDC50Q8IVM0 306 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 GTPBP8Q8N3Z3 284 aaPredicted RBP3.46□□□□□ -1.86
LINC00540-201ENST00000611481 LINC00469Q8N7U9 141 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF615Q8N8J6 731 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 LRTM2Q8N967 370 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 NEXN-AS1Q8NBZ9 246 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF485Q8NCK3 441 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 OR2L5Q8NG80 312 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 OR13F1Q8NGS4 319 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 GPX8Q8TED1 209 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 PIK3R3Q92569 461 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 SLC38A4Q969I6 547 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 NEIL2Q969S2 332 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 TMBIM1Q969X1 311 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 SNF8Q96H20 258 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 AMDHD1Q96NU7 426 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 VAT1Q99536 393 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 NEURL2Q9BR09 285 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 PARD6BQ9BYG5 372 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 SRXN1Q9BYN0 137 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 ANKRD60Q9BZ19 345 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 ZNF442Q9H7R0 627 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 PTGES2Q9H7Z7 377 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 LYRM4Q9HD34 91 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 RAB18Q9NP72 206 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 SLC17A5Q9NRA2 495 aa3.46□□□□□ -1.86
LINC00540-201ENST00000611481 TBC1D24Q9ULP9 559 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms