RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 OTX1P32242 354 aaPredicted RBP5.17□□□□□ -1.58
CUX1-220ENST00000607092 EFNB2P52799 333 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 KRTAP10-3P60369 221 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 SPIBQ01892 262 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 TAF13Q15543 124 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 RFX4Q33E94 735 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 FGD3Q5JSP0 725 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 VAX1Q5SQQ9 334 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 Q6ZPA2 131 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 ZBTB46Q86UZ6 589 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 C10orf67Q8IYJ2 551 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 GCSAMQ8N6F7 178 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 FAM86B1Q8N7N1 296 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 CSNK2A3Q8NEV1 391 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 OR52H1Q8NGJ2 320 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 OR9Q1Q8NGQ5 310 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 OR10Z1Q8NGY1 313 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 OR2T4Q8NH00 348 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 CFHR4Q92496 578 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 FAM46AQ96IP4 442 aaKnown RBP5.17□□□□□ -1.58
CUX1-220ENST00000607092 ERMAPQ96PL5 475 aaPredicted RBP5.17□□□□□ -1.58
CUX1-220ENST00000607092 MICU1Q9BPX6 476 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 HOPXQ9BPY8 73 aaPredicted RBP5.17□□□□□ -1.58
CUX1-220ENST00000607092 DCTN5Q9BTE1 182 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 C1orf21Q9H246 121 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 PPA2Q9H2U2 334 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 TOR3AQ9H497 397 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 RGCCQ9H4X1 137 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 HEXA-AS1Q9H8Q6 139 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 WDR76Q9H967 626 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 SMURF1Q9HCE7 757 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 DNAJB11Q9UBS4 358 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 CD300AQ9UGN4 299 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 ZNF391Q9UJN7 358 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 B9D1Q9UPM9 204 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 SAMD4AQ9UPU9 718 aaKnown RBP5.17□□□□□ -1.58
CUX1-220ENST00000607092 LRP12Q9Y561 859 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 ENPP4Q9Y6X5 453 aa5.17□□□□□ -1.58
CUX1-220ENST00000607092 A0A1W2PQ09 198 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 TMEM210A6NLX4 147 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 G3V4G9 280 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 H0YAE9 185 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 FXYD1O00168 92 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 CXCR6O00574 342 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 FFAR1O14842 300 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 DUS4LO95620 317 aaKnown RBP5.16□□□□□ -1.58
CUX1-220ENST00000607092 POU1F1P28069 291 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 SAA4P35542 130 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 CDKN2AP42771 156 aaKnown RBP5.16□□□□□ -1.58
CUX1-220ENST00000607092 YAP1P46937 504 aaKnown RBP5.16□□□□□ -1.58
CUX1-220ENST00000607092 CAV3P56539 151 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 GRB2P62993 217 aaKnown RBP5.16□□□□□ -1.58
CUX1-220ENST00000607092 ZNF92Q03936 586 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 PCK2Q16822 640 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 LRRC75BQ2VPJ9 315 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 WDR38Q5JTN6 314 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 CORO6Q6QEF8 472 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 PTCHD4Q6ZW05 846 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 CBLL1Q75N03 491 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 DPY19L4Q7Z388 723 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.16□□□□□ -1.58
CUX1-220ENST00000607092 NDUFA11Q86Y39 141 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 OR6V1Q8N148 313 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 ARHGAP24Q8N264 748 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 LINC00471Q8N535 108 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 OR52L1Q8NGH7 329 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 RP9Q8TA86 221 aaKnown RBP5.16□□□□□ -1.58
CUX1-220ENST00000607092 FANK1Q8TC84 345 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 LRRC29Q8WV35 223 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 FAM162AQ96A26 154 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 SLC7A6OSQ96CW6 309 aaPredicted RBP5.16□□□□□ -1.58
CUX1-220ENST00000607092 CMTM5Q96DZ9 223 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 HIST1H2AAQ96QV6 131 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 BTBD10Q9BSF8 475 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 COPS4Q9BT78 406 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 IFT27Q9BW83 186 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 RTL8AQ9BWD3 113 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 MEGF9Q9H1U4 602 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 SIRT7Q9NRC8 400 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 RHCGQ9UBD6 479 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 MPC1Q9Y5U8 109 aa5.16□□□□□ -1.58
CUX1-220ENST00000607092 KMT2CQ8NEZ4 4911 aaKnown RBP5.15□□□□□ -1.58
CUX1-220ENST00000607092 ZNF878C9JN71 531 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 ANKRD65E5RJM6 399 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 H3BUX3 64 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 GYG2O15488 501 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 CLIC3O95833 236 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 HSD11B1P28845 292 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 FMO3P31513 532 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 OMPP47874 163 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 TGM4P49221 684 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 LGALS4P56470 323 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 ELF3P78545 371 aaPredicted RBP5.15□□□□□ -1.59
CUX1-220ENST00000607092 LIPEQ05469 1076 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 SF3A3Q12874 501 aaKnown RBP eCLIP5.15□□□□□ -1.59
CUX1-220ENST00000607092 KLF10Q13118 480 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 MEP1BQ16820 701 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 TIGD6Q17RP2 521 aa5.15□□□□□ -1.59
CUX1-220ENST00000607092 RSPO1Q2MKA7 263 aaPredicted RBP5.15□□□□□ -1.59
CUX1-220ENST00000607092 TEX30Q5JUR7 227 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms