RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 NAXDQ8IW45 347 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 CMTM8Q8IZV2 173 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 SYS1Q8N2H4 156 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 TOMM5Q8N4H5 51 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 TTLQ8NG68 377 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 OR2T33Q8NG76 320 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 OR4F15Q8NGB8 312 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 OR2T4Q8NH00 348 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 RPLP0P6Q8NHW5 317 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 PIGXQ8TBF5 258 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 CD99L2Q8TCZ2 262 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 GANCQ8TET4 914 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 C15orf40Q8WUR7 153 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 CCDC107Q8WV48 283 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 ASB13Q8WXK3 278 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 OTUB2Q96DC9 234 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 C16orf58Q96GQ5 468 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 COX14Q96I36 57 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 NECTIN4Q96NY8 510 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 ERMAPQ96PL5 475 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 SPAG8Q99932 426 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 PRSS27Q9BQR3 290 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 PELOQ9BRX2 385 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 DPH7Q9BTV6 452 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 TMED9Q9BVK6 235 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 ZNF436Q9C0F3 470 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 DNTTIP1Q9H147 329 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 SLC38A1Q9H2H9 487 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 UBQLN3Q9H347 655 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 TMEM231Q9H6L2 316 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 ISG20L2Q9H9L3 353 aaKnown RBP3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 CMC2Q9NRP2 79 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 KLHL28Q9NXS3 571 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 TAS2R5Q9NYW4 299 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 IL36AQ9UHA7 158 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 CYB5R1Q9UHQ9 305 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 ZNF223Q9UK11 482 aaPredicted RBP3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 ZNF222Q9UK12 451 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 POMT2Q9UKY4 750 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 BAIAP2Q9UQB8 552 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 RASD1Q9Y272 281 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 DOCK3Q8IZD9 2030 aa3.27□□□□□ -1.89
SMCHD1-208ENST00000583344 NUP210Q8TEM1 1887 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 PIKFYVEQ9Y2I7 2098 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 TRAV6A0A075B6T7 132 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 A0A087X0K7 114 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 TRAV24A0A0B4J272 114 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 A0A1B0GUH1 482 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 A0A1W2PPV9 198 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 DAPL1A0PJW8 107 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 CIB4A0PJX0 185 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 ANKRD20A5PA0PJZ0 165 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 MFSD2BA6NFX1 497 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 C15orf61A6NNL5 157 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 PRSS46E5RG02 174 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 LRRN3E7EW58 273 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 GABARAPH6UMI1 98 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 TOR1AO14656 332 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 PRRG1O14668 218 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 EEF1E1O43324 174 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 GPRIN2O60269 458 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 GALR3O60755 368 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 CYTIPO60759 359 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 STX11O75558 287 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 REM1O75628 298 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 ARL6IP5O75915 188 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 DFFBO76075 338 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 LYPD3O95274 346 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 FGF19O95750 216 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 LDOC1O95751 146 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 CFDP00746 253 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 RPN2P04844 631 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 HMGN2P05204 90 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 CTSLP07711 333 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 GIPP09681 153 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 UCHL1P09936 223 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 CISD3P0C7P0 127 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 SFTPCP11686 197 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 IRF2P14316 349 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 GNSP15586 552 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 FUT1P19526 365 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 CSNK2A2P19784 350 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 NT5EP21589 574 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 TBXA2RP21731 343 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 ZP3P21754 424 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 PAICSP22234 425 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 NFYAP23511 347 aaPredicted RBP3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 GIFP27352 417 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 TEAD1P28347 426 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 LCN1P31025 176 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 GDI1P31150 447 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 MAT2AP31153 395 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 CA8P35219 290 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 SRP9P49458 86 aaKnown RBP3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 ZNF136P52737 540 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 PDX1P52945 283 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 BLVRAP53004 296 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 FXYD6P3P58550 94 aa3.26□□□□□ -1.89
SMCHD1-208ENST00000583344 TAS2R41P59536 307 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms