RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 CCDC77Q9BR77 488 aa2.59□□□□□ -1.99
SS18-214ENST00000580003 FAM192AQ9GZU8 254 aa2.59□□□□□ -1.99
SS18-214ENST00000580003 PTTG3PQ9NZH4 202 aa2.59□□□□□ -1.99
SS18-214ENST00000580003 SAR1BQ9Y6B6 198 aa2.59□□□□□ -1.99
SS18-214ENST00000580003 RAB5AP20339 215 aa2.58□□□□□ -2
SS18-214ENST00000580003 STOMP27105 288 aa2.58□□□□□ -2
SS18-214ENST00000580003 RAB9AP51151 201 aa2.58□□□□□ -2
SS18-214ENST00000580003 TNFRSF9Q07011 255 aa2.58□□□□□ -2
SS18-214ENST00000580003 PYDC2Q56P42 97 aa2.58□□□□□ -2
SS18-214ENST00000580003 VKORC1L1Q8N0U8 176 aa2.58□□□□□ -2
SS18-214ENST00000580003 N4BP2L2Q92802 583 aaPredicted RBP2.58□□□□□ -2
SS18-214ENST00000580003 CHP1Q99653 195 aa2.58□□□□□ -2
SS18-214ENST00000580003 PLEKHF2Q9H8W4 249 aa2.58□□□□□ -2
SS18-214ENST00000580003 TRIM45Q9H8W5 580 aaPredicted RBP2.58□□□□□ -2
SS18-214ENST00000580003 ASF1BQ9NVP2 202 aa2.58□□□□□ -2
SS18-214ENST00000580003 RCL1Q9Y2P8 373 aaKnown RBP2.58□□□□□ -2
SS18-214ENST00000580003 R4GN34 69 aa2.58□□□□□ -2
SS18-214ENST00000580003 KBTBD11-OT1A0A1B0GTJ5 212 aa2.57□□□□□ -2
SS18-214ENST00000580003 DEDDO75618 318 aa2.57□□□□□ -2
SS18-214ENST00000580003 MMP7P09237 267 aaPredicted RBP2.57□□□□□ -2
SS18-214ENST00000580003 TGM4P49221 684 aa2.57□□□□□ -2
SS18-214ENST00000580003 PPP1CAP62136 330 aa2.57□□□□□ -2
SS18-214ENST00000580003 TRMT5Q32P41 509 aaKnown RBP2.57□□□□□ -2
SS18-214ENST00000580003 FAM131AQ6UXB0 335 aa2.57□□□□□ -2
SS18-214ENST00000580003 BBS7Q8IWZ6 715 aa2.57□□□□□ -2
SS18-214ENST00000580003 RAB1CQ92928 201 aa2.57□□□□□ -2
SS18-214ENST00000580003 MCUR1Q96AQ8 359 aa2.57□□□□□ -2
SS18-214ENST00000580003 RPRD2Q5VT52 1461 aaKnown RBP2.57□□□□□ -2
SS18-214ENST00000580003 ITGB4P16144 1822 aa2.56□□□□□ -2
SS18-214ENST00000580003 A0A0A6YYD5 115 aa2.56□□□□□ -2
SS18-214ENST00000580003 FSTL3O95633 263 aa2.56□□□□□ -2
SS18-214ENST00000580003 AGTP01019 485 aa2.56□□□□□ -2
SS18-214ENST00000580003 TRBV12-3P01733 135 aa2.56□□□□□ -2
SS18-214ENST00000580003 RPS15P62841 145 aaKnown RBP2.56□□□□□ -2
SS18-214ENST00000580003 C6orf99Q4VX62 202 aa2.56□□□□□ -2
SS18-214ENST00000580003 CCDC183Q5T5S1 534 aa2.56□□□□□ -2
SS18-214ENST00000580003 TWF2Q6IBS0 349 aaKnown RBP2.56□□□□□ -2
SS18-214ENST00000580003 GABRG1Q8N1C3 465 aa2.56□□□□□ -2
SS18-214ENST00000580003 SFXN3Q9BWM7 321 aa2.56□□□□□ -2
SS18-214ENST00000580003 PARP11Q9NR21 331 aa2.56□□□□□ -2
SS18-214ENST00000580003 RBFOX1Q9NWB1 397 aaKnown RBP2.56□□□□□ -2
SS18-214ENST00000580003 ZBED9Q6R2W3 1325 aa2.56□□□□□ -2
SS18-214ENST00000580003 MYO16Q9Y6X6 1858 aa2.56□□□□□ -2
SS18-214ENST00000580003 IGHV1-46P01743 117 aa2.55□□□□□ -2
SS18-214ENST00000580003 ACOT2P49753 483 aa2.55□□□□□ -2
SS18-214ENST00000580003 SERPINB8P50452 374 aa2.55□□□□□ -2
SS18-214ENST00000580003 AP1S2P56377 157 aa2.55□□□□□ -2
SS18-214ENST00000580003 RWDD4Q6NW29 188 aaKnown RBP2.55□□□□□ -2
SS18-214ENST00000580003 WDR82Q6UXN9 313 aa2.55□□□□□ -2
SS18-214ENST00000580003 LINC00336Q6ZUF6 198 aa2.55□□□□□ -2
SS18-214ENST00000580003 OR5AR1Q8NGP9 310 aa2.55□□□□□ -2
SS18-214ENST00000580003 NRGNQ92686 78 aa2.55□□□□□ -2
SS18-214ENST00000580003 DUSP21Q9H596 190 aa2.55□□□□□ -2
SS18-214ENST00000580003 ZNF302Q9NR11 478 aa2.55□□□□□ -2
SS18-214ENST00000580003 RAB22AQ9UL26 194 aa2.55□□□□□ -2
SS18-214ENST00000580003 MCTS1Q9ULC4 181 aaKnown RBP2.55□□□□□ -2
SS18-214ENST00000580003 PCNX2A6NKB5 2137 aa2.54□□□□□ -2
SS18-214ENST00000580003 NACADO15069 1562 aa2.54□□□□□ -2
SS18-214ENST00000580003 SLC19A2O60779 497 aa2.54□□□□□ -2
SS18-214ENST00000580003 ERCC1P07992 297 aaPredicted RBP2.54□□□□□ -2
SS18-214ENST00000580003 MERTKQ12866 999 aa2.54□□□□□ -2
SS18-214ENST00000580003 TFDP2Q14188 446 aa2.54□□□□□ -2
SS18-214ENST00000580003 HADHQ16836 314 aaKnown RBP2.54□□□□□ -2
SS18-214ENST00000580003 SPANXN2Q5MJ10 180 aa2.54□□□□□ -2
SS18-214ENST00000580003 ZYG11AQ6WRX3 759 aa2.54□□□□□ -2
SS18-214ENST00000580003 SSX9Q7RTT3 188 aa2.54□□□□□ -2
SS18-214ENST00000580003 LUZP2Q86TE4 346 aa2.54□□□□□ -2
SS18-214ENST00000580003 TMEM159Q96B96 161 aa2.54□□□□□ -2
SS18-214ENST00000580003 S100PBPQ96BU1 408 aa2.54□□□□□ -2
SS18-214ENST00000580003 PANX1Q96RD7 426 aa2.54□□□□□ -2
SS18-214ENST00000580003 CCNB1IP1Q9NPC3 277 aa2.54□□□□□ -2
SS18-214ENST00000580003 SLC22A7Q9Y694 548 aa2.54□□□□□ -2
SS18-214ENST00000580003 ARPC4-TTLL3A0A0A6YYG9 625 aa2.53□□□□□ -2
SS18-214ENST00000580003 CDH16O75309 829 aa2.53□□□□□ -2
SS18-214ENST00000580003 SNX4O95219 450 aa2.53□□□□□ -2
SS18-214ENST00000580003 NRASP01111 189 aa2.53□□□□□ -2
SS18-214ENST00000580003 HRASP01112 189 aa2.53□□□□□ -2
SS18-214ENST00000580003 KRASP01116 189 aa2.53□□□□□ -2
SS18-214ENST00000580003 HLA-HP01893 362 aa2.53□□□□□ -2
SS18-214ENST00000580003 GABRG2P18507 467 aa2.53□□□□□ -2
SS18-214ENST00000580003 ERFP50548 548 aa2.53□□□□□ -2
SS18-214ENST00000580003 UBE2MP61081 183 aaKnown RBP2.53□□□□□ -2
SS18-214ENST00000580003 OR56A4Q8NGH8 313 aa2.53□□□□□ -2
SS18-214ENST00000580003 STACQ99469 402 aa2.53□□□□□ -2
SS18-214ENST00000580003 GCNT4Q9P109 453 aa2.53□□□□□ -2
SS18-214ENST00000580003 CAB39Q9Y376 341 aaPredicted RBP2.53□□□□□ -2
SS18-214ENST00000580003 PSPHP1O15172 72 aa2.52□□□□□ -2.01
SS18-214ENST00000580003 PTMSP20962 102 aa2.52□□□□□ -2.01
SS18-214ENST00000580003 ZNF678Q5SXM1 525 aa2.52□□□□□ -2.01
SS18-214ENST00000580003 TMEM236Q5W0B7 351 aa2.52□□□□□ -2.01
SS18-214ENST00000580003 AMMECR1LQ6DCA0 310 aa2.52□□□□□ -2.01
SS18-214ENST00000580003 MORN3Q6PF18 240 aaPredicted RBP2.52□□□□□ -2.01
SS18-214ENST00000580003 UNC93AQ86WB7 457 aa2.52□□□□□ -2.01
SS18-214ENST00000580003 SNF8Q96H20 258 aa2.52□□□□□ -2.01
SS18-214ENST00000580003 ALS2CR12Q96Q35 445 aa2.52□□□□□ -2.01
SS18-214ENST00000580003 GEMIN7Q9H840 131 aaKnown RBP2.52□□□□□ -2.01
SS18-214ENST00000580003 INIPQ9NRY2 104 aa2.52□□□□□ -2.01
SS18-214ENST00000580003 C20orf96Q9NUD7 363 aaPredicted RBP2.52□□□□□ -2.01
SS18-214ENST00000580003 SAMHD1Q9Y3Z3 626 aaKnown RBP2.52□□□□□ -2.01
SS18-214ENST00000580003 KIAA1671Q9BY89 1806 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms