RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 IDNKQ5T6J7 187 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 SFXN4Q6P4A7 337 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 PLPPR2Q96GM1 343 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 SLITRK2Q9H156 845 aa21.53■■□□□ 1.04
SHMT1-207ENST00000580002 COL12A1Q99715 3063 aa21.52■■□□□ 1.04
SHMT1-207ENST00000580002 ZNF850A8MQ14 1090 aa21.52■■□□□ 1.04
SHMT1-207ENST00000580002 PTAFRP25105 342 aa21.52■■□□□ 1.04
SHMT1-207ENST00000580002 THBS2P35442 1172 aa21.52■■□□□ 1.04
SHMT1-207ENST00000580002 ADAM5Q6NVV9 412 aa21.52■■□□□ 1.04
SHMT1-207ENST00000580002 CRIP3Q6Q6R5 217 aa21.52■■□□□ 1.04
SHMT1-207ENST00000580002 NEUROG1Q92886 237 aa21.52■■□□□ 1.04
SHMT1-207ENST00000580002 DACH2Q96NX9 599 aa21.52■■□□□ 1.04
SHMT1-207ENST00000580002 CHST5Q9GZS9 411 aa21.52■■□□□ 1.04
SHMT1-207ENST00000580002 FGF23Q9GZV9 251 aaPredicted RBP21.52■■□□□ 1.04
SHMT1-207ENST00000580002 CKLFQ9UBR5 152 aa21.52■■□□□ 1.04
SHMT1-207ENST00000580002 V9GY05 133 aa21.52■■□□□ 1.04
SHMT1-207ENST00000580002 J3QW42 95 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 CTDSP2O14595 271 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 PAHP00439 452 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 RAB3AP20336 220 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 CFL1P23528 166 aaKnown RBP21.51■■□□□ 1.03
SHMT1-207ENST00000580002 TMEM42Q69YG0 159 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 LYPD6Q86Y78 171 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 TRMT10AQ8TBZ6 339 aaKnown RBP21.51■■□□□ 1.03
SHMT1-207ENST00000580002 UBASH3BQ8TF42 649 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 THRSPQ92748 146 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 PIGTQ969N2 578 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 HAVCR1Q96D42 359 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 LRRC46Q96FV0 321 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 BCL2L14Q9BZR8 327 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP21.51■■□□□ 1.03
SHMT1-207ENST00000580002 ANXA2P2A6NMY6 339 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 NOTOA8MTQ0 251 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 SULT1B1O43704 296 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 PLAUP00749 431 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 PAX7P23759 505 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 BDKRB2P30411 391 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 BMXP51813 675 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 PPP3R1P63098 170 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 NCMAPQ5T1S8 102 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 C1QTNF12Q5T7M4 302 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 SLC22A25Q6T423 547 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 MOB3CQ70IA8 216 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 DMRTC2Q8IXT2 367 aaPredicted RBP21.51■■□□□ 1.03
SHMT1-207ENST00000580002 MCFD2Q8NI22 146 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 MYEF2Q9P2K5 600 aaKnown RBP21.51■■□□□ 1.03
SHMT1-207ENST00000580002 ICE1Q9Y2F5 2266 aa21.51■■□□□ 1.03
SHMT1-207ENST00000580002 UBR5O95071 2799 aaPredicted RBP21.51■■□□□ 1.03
SHMT1-207ENST00000580002 PLCE1Q9P212 2302 aa21.5■■□□□ 1.03
SHMT1-207ENST00000580002 DHRS7CA6NNS2 312 aa21.5■■□□□ 1.03
SHMT1-207ENST00000580002 ZNF404Q494X3 552 aa21.5■■□□□ 1.03
SHMT1-207ENST00000580002 TMEM171Q8WVE6 324 aa21.5■■□□□ 1.03
SHMT1-207ENST00000580002 RFT1Q96AA3 541 aa21.5■■□□□ 1.03
SHMT1-207ENST00000580002 HS3ST6Q96QI5 342 aa21.5■■□□□ 1.03
SHMT1-207ENST00000580002 NXF2Q9GZY0 626 aaKnown RBP21.5■■□□□ 1.03
SHMT1-207ENST00000580002 KCNK15Q9H427 330 aa21.5■■□□□ 1.03
SHMT1-207ENST00000580002 ZNF816-ZNF321PA0A0X1KG74 233 aa21.49■■□□□ 1.03
SHMT1-207ENST00000580002 PDCD5O14737 125 aa21.49■■□□□ 1.03
SHMT1-207ENST00000580002 NRASP01111 189 aa21.49■■□□□ 1.03
SHMT1-207ENST00000580002 RAC2P15153 192 aa21.49■■□□□ 1.03
SHMT1-207ENST00000580002 SOX6P35712 828 aa21.49■■□□□ 1.03
SHMT1-207ENST00000580002 CLVS2Q5SYC1 327 aa21.49■■□□□ 1.03
SHMT1-207ENST00000580002 UTS2BQ765I0 119 aa21.49■■□□□ 1.03
SHMT1-207ENST00000580002 CCDC54Q8NEL0 328 aa21.49■■□□□ 1.03
SHMT1-207ENST00000580002 PP6455Q8WZ26 134 aa21.49■■□□□ 1.03
SHMT1-207ENST00000580002 PAPOLGQ9BWT3 736 aaKnown RBP21.49■■□□□ 1.03
SHMT1-207ENST00000580002 C6orf62Q9GZU0 229 aaPredicted RBP21.49■■□□□ 1.03
SHMT1-207ENST00000580002 TMEM138Q9NPI0 162 aa21.49■■□□□ 1.03
SHMT1-207ENST00000580002 IFITM5A6NNB3 132 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 SNRPBP14678 240 aaKnown RBP21.48■■□□□ 1.03
SHMT1-207ENST00000580002 PRDX4Q13162 271 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 DDI2Q5TDH0 399 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 RGS7BPQ6MZT1 257 aaPredicted RBP21.48■■□□□ 1.03
SHMT1-207ENST00000580002 OR5H6Q8NGV6 325 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 TBC1D15Q8TC07 691 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 GTF3AQ92664 365 aaKnown RBP21.48■■□□□ 1.03
SHMT1-207ENST00000580002 SPTAN1Q13813 2472 aaKnown RBP21.48■■□□□ 1.03
SHMT1-207ENST00000580002 IGKV1-27A0A075B6S5 117 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 SHISA9B4DS77 424 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 CA6P23280 308 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 GLRXP35754 106 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 PLA2G7Q13093 441 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 P2RY14Q15391 338 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 ZNF718Q3SXZ3 478 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 JAGN1Q8N5M9 183 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 SSC4DQ8WTU2 575 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 C10orf35Q96D05 121 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 SYT3Q9BQG1 590 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 COMMD3Q9UBI1 195 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 DUSP13Q9UII6 198 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 PURGQ9UJV8 347 aaKnown RBP21.48■■□□□ 1.03
SHMT1-207ENST00000580002 ATP23Q9Y6H3 246 aa21.48■■□□□ 1.03
SHMT1-207ENST00000580002 H0YL77 283 aa21.47■■□□□ 1.03
SHMT1-207ENST00000580002 CLPXO76031 633 aa21.47■■□□□ 1.03
SHMT1-207ENST00000580002 CD37P11049 281 aa21.47■■□□□ 1.03
SHMT1-207ENST00000580002 AZGP1P25311 298 aaKnown RBP21.47■■□□□ 1.03
SHMT1-207ENST00000580002 LOXP28300 417 aaPredicted RBP21.47■■□□□ 1.03
SHMT1-207ENST00000580002 OR4D6Q8NGJ1 314 aa21.47■■□□□ 1.03
SHMT1-207ENST00000580002 OPA3Q9H6K4 179 aa21.47■■□□□ 1.03
SHMT1-207ENST00000580002 CNTD2Q9H8S5 307 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms