RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ZCCHC4Q9H5U6 513 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 TAS2R4Q9NYW5 299 aa13.84□□□□□ -0.19
SS18-211ENST00000578954 A0A1W2PPW3 197 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 SDC2P34741 201 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 PRSS12P56730 875 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 DAZAP2Q15038 168 aaPredicted RBP13.83□□□□□ -0.2
SS18-211ENST00000578954 CLVS2Q5SYC1 327 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 OR2T2Q6IF00 324 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 FTMTQ8N4E7 242 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 OR5D14Q8NGL3 314 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 DYNC2LI1Q8TCX1 351 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 TECTBQ96PL2 329 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 SPOCK3Q9BQ16 436 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 SLITRK2Q9H156 845 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 TCF7L1Q9HCS4 588 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 CA10Q9NS85 328 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 MRPL15Q9P015 296 aaKnown RBP13.83□□□□□ -0.2
SS18-211ENST00000578954 CKLFQ9UBR5 152 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 PURGQ9UJV8 347 aaKnown RBP13.83□□□□□ -0.2
SS18-211ENST00000578954 RNF115Q9Y4L5 304 aa13.83□□□□□ -0.2
SS18-211ENST00000578954 A0A0G2JK05 382 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 A0A1B0GWJ7 208 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 ANKRD61A6NGH8 418 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 CDRT1O95170 752 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 IGHV3-13P01766 116 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 ADRA2CP18825 462 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 CFPP27918 469 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 GCH1P30793 250 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 GNALP38405 381 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 RPS19P39019 145 aaKnown RBP13.82□□□□□ -0.2
SS18-211ENST00000578954 CEP78Q5JTW2 689 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 ADAM5Q6NVV9 412 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 LYPD6Q86Y78 171 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 OR5AS1Q8N127 324 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 OR1M1Q8NGA1 313 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 SYNPRQ8TBG9 265 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 MRPL24Q96A35 216 aaKnown RBP13.82□□□□□ -0.2
SS18-211ENST00000578954 HS3ST6Q96QI5 342 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 GFI1Q99684 422 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 SLC30A2Q9BRI3 323 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 KCNN3Q9UGI6 736 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 RHBDD3Q9Y3P4 386 aa13.82□□□□□ -0.2
SS18-211ENST00000578954 LRRK2Q5S007 2527 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 IGKV1-9A0A0C4DH69 117 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 MEGF11A6BM72 1044 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 A6NIN4 97 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 PDCD5O14737 125 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 SULT1B1O43704 296 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 GMDSO60547 372 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 ALDOBP05062 364 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 PRF1P14222 555 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 ATF1P18846 271 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 RAB3AP20336 220 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 RAB3BP20337 219 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 PPP3R1P63098 170 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 UBE2V2Q15819 145 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 CNPY1Q3B7I2 92 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 ALKBH6Q3KRA9 238 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 MEX3BQ6ZN04 569 aaKnown RBP13.81□□□□□ -0.2
SS18-211ENST00000578954 NR2C2APQ86WQ0 139 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 CDH26Q8IXH8 852 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 NKAIN3Q8N8D7 197 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 OR51A2Q8NGJ7 313 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 OR13C9Q8NGT0 318 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 SLC25A46Q96AG3 418 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 ABCB9Q9NP78 766 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 TMEM138Q9NPI0 162 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 CCDC59Q9P031 241 aaKnown RBP13.81□□□□□ -0.2
SS18-211ENST00000578954 CMAHPQ9Y471 501 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 MPC1Q9Y5U8 109 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 ATP23Q9Y6H3 246 aa13.81□□□□□ -0.2
SS18-211ENST00000578954 ANKRD30BLA7E2S9 258 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 PRSS44E7EML9 344 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 E7EQL1 145 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 LILRA1O75019 489 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 NRASP01111 189 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 ERCC1P07992 297 aaPredicted RBP13.8□□□□□ -0.2
SS18-211ENST00000578954 CLEC2LP0C7M8 214 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 BDKRB2P30411 391 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 EVX1P49640 407 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 FABP6P51161 128 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 KLF3P57682 345 aaPredicted RBP13.8□□□□□ -0.2
SS18-211ENST00000578954 CNN3Q15417 329 aaKnown RBP13.8□□□□□ -0.2
SS18-211ENST00000578954 ADIPOQQ15848 244 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 OR8G5Q8NG78 346 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 LILRB1Q8NHL6 650 aaPredicted RBP13.8□□□□□ -0.2
SS18-211ENST00000578954 SPSB1Q96BD6 273 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 PIK3IP1Q96FE7 263 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 CGGBP1Q9UFW8 167 aaPredicted RBP13.8□□□□□ -0.2
SS18-211ENST00000578954 ABCA4P78363 2273 aa13.8□□□□□ -0.2
SS18-211ENST00000578954 ROS1P08922 2347 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 FAM221AA4D161 298 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 NOTOA8MTQ0 251 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 TMEM127O75204 238 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 PLAUP00749 431 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 ZNF182P17025 639 aaPredicted RBP13.79□□□□□ -0.2
SS18-211ENST00000578954 PSMD7P51665 324 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 MXD1Q05195 221 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 PRDX4Q13162 271 aa13.79□□□□□ -0.2
SS18-211ENST00000578954 ZNF672Q499Z4 452 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms