RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 SHISA3A0PJX4 238 aa8.81□□□□□ -1
SS18-210ENST00000578700 OR6C6A6NF89 314 aa8.81□□□□□ -1
SS18-210ENST00000578700 IFITM5A6NNB3 132 aa8.81□□□□□ -1
SS18-210ENST00000578700 F5H5K5 113 aa8.81□□□□□ -1
SS18-210ENST00000578700 AIPO00170 330 aa8.81□□□□□ -1
SS18-210ENST00000578700 P2RY10O00398 339 aa8.81□□□□□ -1
SS18-210ENST00000578700 TBX1O43435 398 aa8.81□□□□□ -1
SS18-210ENST00000578700 DOK2O60496 412 aa8.81□□□□□ -1
SS18-210ENST00000578700 HPGDSO60760 199 aa8.81□□□□□ -1
SS18-210ENST00000578700 SS18L1O75177 396 aaPredicted RBP8.81□□□□□ -1
SS18-210ENST00000578700 MTRF1O75570 445 aaKnown RBP8.81□□□□□ -1
SS18-210ENST00000578700 UPK1BO75841 260 aa8.81□□□□□ -1
SS18-210ENST00000578700 WNT11O96014 354 aa8.81□□□□□ -1
SS18-210ENST00000578700 IGHV3-9P01782 118 aa8.81□□□□□ -1
SS18-210ENST00000578700 APOA1P02647 267 aa8.81□□□□□ -1
SS18-210ENST00000578700 MAS1P04201 325 aa8.81□□□□□ -1
SS18-210ENST00000578700 OCMP0CE72 109 aaPredicted RBP8.81□□□□□ -1
SS18-210ENST00000578700 ARR3P36575 388 aa8.81□□□□□ -1
SS18-210ENST00000578700 GNALP38405 381 aa8.81□□□□□ -1
SS18-210ENST00000578700 INPP1P49441 399 aa8.81□□□□□ -1
SS18-210ENST00000578700 OR10A3P58181 314 aa8.81□□□□□ -1
SS18-210ENST00000578700 ZNF121P58317 390 aaPredicted RBP8.81□□□□□ -1
SS18-210ENST00000578700 ARF1P84077 181 aaKnown RBP8.81□□□□□ -1
SS18-210ENST00000578700 PITPNAQ00169 270 aa8.81□□□□□ -1
SS18-210ENST00000578700 TGFBR3Q03167 851 aa8.81□□□□□ -1
SS18-210ENST00000578700 PLP2Q04941 152 aa8.81□□□□□ -1
SS18-210ENST00000578700 FAPQ12884 760 aa8.81□□□□□ -1
SS18-210ENST00000578700 IL18Q14116 193 aa8.81□□□□□ -1
SS18-210ENST00000578700 PYDC2Q56P42 97 aa8.81□□□□□ -1
SS18-210ENST00000578700 FBXW9Q5XUX1 488 aa8.81□□□□□ -1
SS18-210ENST00000578700 TMEM53Q6P2H8 277 aa8.81□□□□□ -1
SS18-210ENST00000578700 DRAM2Q6UX65 266 aa8.81□□□□□ -1
SS18-210ENST00000578700 STAC2Q6ZMT1 411 aa8.81□□□□□ -1
SS18-210ENST00000578700 FAM57BQ71RH2 274 aa8.81□□□□□ -1
SS18-210ENST00000578700 DOK3Q7L591 496 aa8.81□□□□□ -1
SS18-210ENST00000578700 SERPINA12Q8IW75 414 aa8.81□□□□□ -1
SS18-210ENST00000578700 NKAIN3Q8N8D7 197 aa8.81□□□□□ -1
SS18-210ENST00000578700 GDPD1Q8N9F7 314 aa8.81□□□□□ -1
SS18-210ENST00000578700 MINDY2Q8NBR6 621 aa8.81□□□□□ -1
SS18-210ENST00000578700 OR52H1Q8NGJ2 320 aa8.81□□□□□ -1
SS18-210ENST00000578700 OR1F12Q8NHA8 337 aa8.81□□□□□ -1
SS18-210ENST00000578700 HTRA1Q92743 480 aa8.81□□□□□ -1
SS18-210ENST00000578700 FOXRED1Q96CU9 486 aaPredicted RBP8.81□□□□□ -1
SS18-210ENST00000578700 CMTM3Q96MX0 182 aa8.81□□□□□ -1
SS18-210ENST00000578700 OR10A2Q9H208 303 aa8.81□□□□□ -1
SS18-210ENST00000578700 NEK6Q9HC98 313 aa8.81□□□□□ -1
SS18-210ENST00000578700 ABCB10Q9NRK6 738 aa8.81□□□□□ -1
SS18-210ENST00000578700 SLC7A10Q9NS82 523 aa8.81□□□□□ -1
SS18-210ENST00000578700 ZNF701Q9NV72 531 aaPredicted RBP8.81□□□□□ -1
SS18-210ENST00000578700 H3BSH0 61 aa8.8□□□□□ -1
SS18-210ENST00000578700 M0R135 149 aa8.8□□□□□ -1
SS18-210ENST00000578700 HS3ST1O14792 307 aa8.8□□□□□ -1
SS18-210ENST00000578700 PIN1P1O15428 100 aa8.8□□□□□ -1
SS18-210ENST00000578700 MAGEB3O15480 346 aa8.8□□□□□ -1
SS18-210ENST00000578700 CGAP01215 116 aa8.8□□□□□ -1
SS18-210ENST00000578700 TTRP02766 147 aa8.8□□□□□ -1
SS18-210ENST00000578700 THBDP07204 575 aa8.8□□□□□ -1
SS18-210ENST00000578700 ACSM4P0C7M7 580 aa8.8□□□□□ -1
SS18-210ENST00000578700 CALCBP10092 127 aa8.8□□□□□ -1
SS18-210ENST00000578700 SLC2A2P11168 524 aaPredicted RBP8.8□□□□□ -1
SS18-210ENST00000578700 ZNF32P17041 273 aa8.8□□□□□ -1
SS18-210ENST00000578700 FSTP19883 344 aa8.8□□□□□ -1
SS18-210ENST00000578700 AGTR1P30556 359 aa8.8□□□□□ -1
SS18-210ENST00000578700 NTF4P34130 210 aa8.8□□□□□ -1
SS18-210ENST00000578700 CDKN1AP38936 164 aa8.8□□□□□ -1
SS18-210ENST00000578700 OR3A2P47893 321 aa8.8□□□□□ -1
SS18-210ENST00000578700 HTR5AP47898 357 aa8.8□□□□□ -1
SS18-210ENST00000578700 EVX1P49640 407 aa8.8□□□□□ -1
SS18-210ENST00000578700 SCAND1P57086 179 aa8.8□□□□□ -1
SS18-210ENST00000578700 RAB11BQ15907 218 aa8.8□□□□□ -1
SS18-210ENST00000578700 TRIM16LQ309B1 348 aa8.8□□□□□ -1
SS18-210ENST00000578700 GFOD2Q3B7J2 385 aa8.8□□□□□ -1
SS18-210ENST00000578700 CHRFAM7AQ494W8 412 aa8.8□□□□□ -1
SS18-210ENST00000578700 CCDC92Q53HC0 331 aaPredicted RBP8.8□□□□□ -1
SS18-210ENST00000578700 UBE2NLQ5JXB2 153 aa8.8□□□□□ -1
SS18-210ENST00000578700 CNIH2Q6PI25 160 aa8.8□□□□□ -1
SS18-210ENST00000578700 PGAP1Q75T13 922 aa8.8□□□□□ -1
SS18-210ENST00000578700 FAM214BQ7L5A3 538 aa8.8□□□□□ -1
SS18-210ENST00000578700 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.8□□□□□ -1
SS18-210ENST00000578700 ZNF611Q8N823 705 aa8.8□□□□□ -1
SS18-210ENST00000578700 OR51A4Q8NGJ6 313 aa8.8□□□□□ -1
SS18-210ENST00000578700 OR10AC1Q8NH08 325 aa8.8□□□□□ -1
SS18-210ENST00000578700 OR51E1Q8TCB6 317 aa8.8□□□□□ -1
SS18-210ENST00000578700 C15orf40Q8WUR7 153 aa8.8□□□□□ -1
SS18-210ENST00000578700 PHF21AQ96BD5 680 aa8.8□□□□□ -1
SS18-210ENST00000578700 FBXO17Q96EF6 278 aa8.8□□□□□ -1
SS18-210ENST00000578700 ZNF837Q96EG3 531 aaPredicted RBP8.8□□□□□ -1
SS18-210ENST00000578700 ZNF799Q96GE5 643 aa8.8□□□□□ -1
SS18-210ENST00000578700 OR2H1Q9GZK4 316 aa8.8□□□□□ -1
SS18-210ENST00000578700 ZCCHC4Q9H5U6 513 aa8.8□□□□□ -1
SS18-210ENST00000578700 C12orf49Q9H741 205 aa8.8□□□□□ -1
SS18-210ENST00000578700 PNRC2Q9NPJ4 139 aaKnown RBP8.8□□□□□ -1
SS18-210ENST00000578700 ZNF275Q9NSD4 429 aaPredicted RBP8.8□□□□□ -1
SS18-210ENST00000578700 EXTL2Q9UBQ6 330 aa8.8□□□□□ -1
SS18-210ENST00000578700 ATPIF1Q9UII2 106 aa8.8□□□□□ -1
SS18-210ENST00000578700 ZNF391Q9UJN7 358 aa8.8□□□□□ -1
SS18-210ENST00000578700 ETV7Q9Y603 341 aa8.8□□□□□ -1
SS18-210ENST00000578700 SVEP1Q4LDE5 3571 aa8.79□□□□□ -1
SS18-210ENST00000578700 A0A0G2JK05 382 aa8.79□□□□□ -1
SS18-210ENST00000578700 A0A0U1RQV5 110 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms