RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 TRIQKQ629K1 86 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 SAXO2Q658L1 398 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 RNASEKQ6P5S7 137 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 UGT2A3Q6UWM9 527 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 CXCL17Q6UXB2 119 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 ABHD13Q7L211 337 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 COMMD7Q86VX2 200 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 PGAM4Q8N0Y7 254 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 KIR2DL5AQ8N109 375 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 Q8N402 240 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 C9orf62Q8N4C0 152 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 CERS5Q8N5B7 392 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 EIF4E3Q8N5X7 224 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 FBXO36Q8NEA4 188 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 PXT1Q8NFP0 134 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 ITFG1Q8TB96 612 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 PIGXQ8TBF5 258 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 APH1BQ8WW43 257 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 SMARCD2Q92925 531 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 DLX4Q92988 240 aaPredicted RBP2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 STMN2Q93045 179 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 MRPS26Q9BYN8 205 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 PORCNQ9H237 461 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 TMEM231Q9H6L2 316 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 WDR76Q9H967 626 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 SGK2Q9HBY8 427 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 LHX9Q9NQ69 397 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 PRSS16Q9NQE7 514 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 PLEKHJ1Q9NW61 149 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 C1orf109Q9NX04 203 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 MARCH5Q9NX47 278 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 GHRLQ9UBU3 117 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 RSL24D1Q9UHA3 163 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 CSDC2Q9Y534 153 aaKnown RBP2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 SLCO1B1Q9Y6L6 691 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 RB1CC1Q8TDY2 1594 aa2.52□□□□□ -2.01
SMCHD1-202ENST00000577300 ZNF609O15014 1411 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 PTPRUQ92729 1446 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 UACAQ9BZF9 1416 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 A0A1W2PP64 1363 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 CARMIL3Q8ND23 1372 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 CEMIPQ8WUJ3 1361 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 TMEM2Q9UHN6 1383 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 WDR97A6NE52 1622 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 TRBV6-6A0A0A6YYG2 114 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 TRBV11-1A0A0K0K1C0 115 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 TMEM89A2RUT3 159 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 TMEM150BA6NC51 233 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 OR11H12B2RN74 326 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 C9J4A7 227 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 TP53I11O14683 189 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 CDIPTO14735 213 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 RAB29O14966 203 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 RS1O15537 224 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 TCF21O43680 179 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 ENTPD5O75356 428 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 SPAG7O75391 227 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 VAPBO95292 243 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 PSMG1O95456 288 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 FADS2O95864 444 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 CST1P01037 141 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 ARG1P05089 322 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 SFTPBP07988 381 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 ZNF30P17039 623 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 CSNK2A2P19784 350 aaPredicted RBP2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 GCAP28676 217 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 DDOSTP39656 456 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 RFC3P40938 356 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 CSNK1A1P48729 337 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 EVX1P49640 407 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 NOVA1P51513 510 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 KLF3P57682 345 aaPredicted RBP2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 CDC42P60953 191 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 MAGOHP61326 146 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 PKIAP61925 76 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 TIMM10P62072 90 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 SELENOTP62341 195 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 EMX2Q04743 252 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 EGFEM1PQ0D2K5 195 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 INCA1Q0VD86 236 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 ECH1Q13011 328 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 SKP2Q13309 424 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 BIKQ13323 160 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 EIF2B1Q14232 305 aaKnown RBP2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 ATP6V1FQ16864 119 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 EXOC3L2Q2M3D2 409 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 AGKQ53H12 422 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 TIMM23BQ5SRD1 257 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 OR52W1Q6IF63 320 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 FAM45BPQ6NSW5 357 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 H3F3CQ6NXT2 135 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 TCF24Q7RTU0 167 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 FAM220AQ7Z4H9 259 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 SCD5Q86SK9 330 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 SLC22A16Q86VW1 577 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 STHQ8IWL8 128 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 DHRSXQ8N5I4 330 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 CSNK1A1LQ8N752 337 aa2.51□□□□□ -2.01
SMCHD1-202ENST00000577300 CDRT4Q8N9R6 151 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms