RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 TDGF1P3P51864 188 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 LINC00205P59089 165 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 ADARB1P78563 741 aaKnown RBP4.55□□□□□ -1.68
VPS53-219ENST00000576019 ECH1Q13011 328 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 ABRAXAS2Q15018 415 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 IGFL3Q6UXB1 125 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 Q6ZN92 141 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 Q6ZS92 163 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 SMIM29Q86T20 159 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 ZNF546Q86UE3 836 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 LRRTM1Q86UE6 522 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 LHFPL3Q86UP9 236 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 CDC20BQ86Y33 519 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 BBS7Q8IWZ6 715 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 SLC22A18ASQ8N1D0 253 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 FTMTQ8N4E7 242 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 MRGPRDQ8TDS7 321 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 CDKL2Q92772 493 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 TAF15Q92804 592 aaKnown RBP eCLIP4.55□□□□□ -1.68
VPS53-219ENST00000576019 RARRES2Q99969 163 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 OSBPL10Q9BXB5 764 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 ULBP2Q9BZM5 246 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 CHRNA10Q9GZZ6 450 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 BOLA2Q9H3K6 86 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 TMEM38AQ9H6F2 299 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 VCX3AQ9NNX9 186 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 NECAP2Q9NVZ3 263 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 MCUBQ9NWR8 336 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 QPCTLQ9NXS2 382 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 IL17CQ9P0M4 197 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 LGALS13Q9UHV8 139 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 MRPS28Q9Y2Q9 187 aaKnown RBP4.55□□□□□ -1.68
VPS53-219ENST00000576019 TSSC4Q9Y5U2 329 aaPredicted RBP4.55□□□□□ -1.68
VPS53-219ENST00000576019 ABCA1O95477 2261 aa4.55□□□□□ -1.68
VPS53-219ENST00000576019 IGHV4-30-2A0A087WSY4 118 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 TSPAN11A1L157 253 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 FAM172BPA6NC97 362 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 ARGFXA6NJG6 315 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 SLCO1B7G3V0H7 640 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 PRAMEF26H0Y7S4 382 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 PRMT5O14744 637 aaPredicted RBP4.54□□□□□ -1.68
VPS53-219ENST00000576019 SLC2A10O95528 541 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 TDP2O95551 362 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 LALBAP00709 142 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 KLK3P07288 261 aaPredicted RBP4.54□□□□□ -1.68
VPS53-219ENST00000576019 PNMA6AP0CW24 399 aaPredicted RBP4.54□□□□□ -1.68
VPS53-219ENST00000576019 GNB3P16520 340 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 PSMB6P28072 239 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 GCKP35557 465 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 GSCP56915 257 aaPredicted RBP4.54□□□□□ -1.68
VPS53-219ENST00000576019 LMO4P61968 165 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 CHRNB3Q05901 458 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 SMARCB1Q12824 385 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 UBE2SQ16763 222 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 PARP15Q460N3 678 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 PAN3Q58A45 887 aaKnown RBP4.54□□□□□ -1.68
VPS53-219ENST00000576019 BSPRYQ5W0U4 402 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 C1orf94Q6P1W5 598 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 TMIGD1Q6UXZ0 262 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 ACOT7LQ6ZUV0 252 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 C9orf40Q8IXQ3 194 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 ZNF557Q8N988 423 aaPredicted RBP4.54□□□□□ -1.68
VPS53-219ENST00000576019 LGALS14Q8TCE9 139 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 TMEM239Q8WW34 195 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 RPEQ96AT9 228 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 CCDC28BQ9BUN5 200 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 ANGPTL4Q9BY76 406 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 OCR1Q9BZK8 76 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 FOLH1BQ9HBA9 442 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 AMBNQ9NP70 447 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 SDHAF3Q9NRP4 125 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 NDE1Q9NXR1 346 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 SLC39A1Q9NY26 324 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 GNPTGQ9UJJ9 305 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 PPIL1Q9Y3C6 166 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 URGCP-MRPS24S4R325 110 aa4.54□□□□□ -1.68
VPS53-219ENST00000576019 MPTX1A8MV57 137 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 RNASEK-C17orf49H0YIS7 233 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 K7EN84 100 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 LSM8O95777 96 aaKnown RBP4.53□□□□□ -1.68
VPS53-219ENST00000576019 OXTP01178 125 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 ALPLP05186 524 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 PATE4P0C8F1 98 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 ZSCAN5DPP0CG00 497 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 RBMY1A1P0DJD3 496 aaKnown RBP4.53□□□□□ -1.68
VPS53-219ENST00000576019 VDAC1P21796 283 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 HAAOP46952 286 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 CCR8P51685 355 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 STXBP1P61764 594 aaKnown RBP4.53□□□□□ -1.68
VPS53-219ENST00000576019 MRPS15P82914 257 aaKnown RBP4.53□□□□□ -1.68
VPS53-219ENST00000576019 TFF3Q07654 80 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 SLAMF1Q13291 335 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 MICAQ29983 383 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 SDHAF4Q5VUM1 108 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 HSD17B11Q8NBQ5 300 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 BEST4Q8NFU0 473 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 OR2AP1Q8NGE2 309 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 LMX1AQ8TE12 382 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 SLC25A38Q96DW6 304 aa4.53□□□□□ -1.68
VPS53-219ENST00000576019 CENPNQ96H22 339 aaPredicted RBP4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms